| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0670 |
|---|
| Symbol | |
|---|
| ID | 8379855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 711733 |
|---|
| End bp | 714234 |
|---|
| Gene Length | 2502 bp |
|---|
| Protein Length | 833 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645003407 |
|---|
| Product | ATP-dependent DNA helicase PcrA |
|---|
| Protein accession | YP_003160637 |
|---|
| Protein GI | 256831910 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01073] ATP-dependent DNA helicase PcrA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.117887 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCTT TGTTTGGGCA CTTGCCTTCA GTGACCGGTC CGACCTCACA AGCAGCGCTC
CCTCGGTTAG CGCCAGGTGG TGCGTGGACA CAACCCACCC CTGACGAGCC TCGATCAGCA
TTCGTCGACG ACGCACAAGC GTTACTTACA GGGCTGAACC CGCAACAGCA AGCGGCTGTG
GAGCATGCAG GGTCCCCCCT TTTGATTGTG GCTGGGGCAG GATCGGGCAA AACACGAGTG
TTGACCCACC GGATTGCGTG GCTCTTGGCG ACCGGGCGTG CGTGGCCCAG TGAAATACTG
GCTATTACAT TCACGAACAA AGCCGCTGCG GAAATGCGTG AGCGCGTGAT CCAGATTGTT
GGTCCATCAG CTCAACGAAT GTGGGTGTCG ACTTTCCACT CCACATGTGT ACGGATTTTG
CGTGCCCATG CAAGCGCACT GGGCCTCAAA TCGACTTTTT CGATTTATGA CTCCGCTGAT
TCGCAGCGCT TGTTGGGTTT AGTTGTCCGA GAGTTAGAAC TTGACCCCAA ACGCTTCACC
CCGAAAGGGG TAGCTCAACG GATTTCAGGG CTCAAAGATG AGCTCATGAC GCCAGCGGAC
CACCTGGTTC GTGCTGGTTC CAATGATTAC GAGGTCATGA TTGGTCGGAT TTTTGAGCGC
TATCAGCAGC GACTCGCGAC CGCCCATGCC TTGGACTTTG ATGACATCAT TGTGCGCACC
GTTGATCTGT TGCGGCAGTT CCCCGAAGTG CGTGACCACT ATCAACGCAG GTTCCGGCAC
ATCCTTGTTG ATGAGTACCA GGACACAAAC CATGCGCAAT ATGCGCTGAT TCGGGAGTTG
GTGGGCACCG ATCATGATGG TCTCACCGCG AGTGAGCTGA CTGTTGTTGG TGACTCTGAC
CAGTCGATTT ACGCATTCCG TGGCGCGTCA ATCCGTAACA TTTTGGAGTT TGAGCAGGAT
TACCCTCAAG CGCGCACCAT TTTGTTGGAG CAAAACTACC GTTCCACCCA GACTATATTG
TCGGCAGCCA ACGCAGTCAT TTCGCGGAAC AATGACCGTC GCCCAAAGAA GCTGTGGACT
GCTGCCGGTG ACGGCCCAGC AATCGTTGGC TACGTGGGAG ATACGGAACA CGACGAAGCA
CGATGGATCG CACGAGAAAT TGATTCCCTC ATGGACAAAC ACGGTGTGCG CCCTGGAGAC
GTCGCCGTGT TTTACCGGAC AAATAACCAA TCTCGAGCGC TCGAGGAAGT GCTCATCCGA
GTAGGTTTAC CGTACAAAGT TGTGGGTGGC ACCCGCTTCT ATGAGCGCAA AGAAATCAAG
GACGTTCTTG CCTACCTTCA TGCGGTGAAT AACAGTGACG ACGACGTCAA CGTGCGACGC
ATCATCAATG TGCCCAAACG AGGGTTGGGC GACCGCAGTG AGGCAGTGAT CGCCCAGTTT
GCTGCCGCCC ACGACATATC ATTTGCTGAT GCGCTTCGCC GTATTGACAC GATCCCTGGG
CTGACAGCAC GGTCAACAAA ACCCGCGCGA GCGTTTGCTC AGTTGCTCGA CACGTGGCAG
CAAAACGTGG ATCAAGGGGT CGGCCCGGCA GGGCTTATTT CGGCGATTCT TGATGACACG
GGGTACTTGG AGTTACTCCG TGATAGTGAG GACCCACAGG ATCAGTCCCG AGTAGAAAAC
CTTGCAGAAC TTCATGCAGT GGCCATGGAA TACGAAAAAG AGGACCCCGA GGGAGGCCTT
GGAGGATTCC TTGAACGGGT GTCATTGGTC GCAGACGCAG ATTCTGTACC GTCAAGTGAC
GACGCAGGTC ATGAAGACAC TCCGGTTGTT GACCCTGGAG TGATCACACT GATGACCTTG
CATACAGCCA AAGGACTGGA GTTTCCGGTG GCATTTCTCA CCGGTTTAGA AGACGGGACC
TTCCCCCATA TGCGTGCACT CCTTGATGAC AGCGAACTGT CAGAGGAGCG GCGTCTTGCC
TACGTTGGCG TGACTCGTGC GCGCGAACGT CTCTACCTTA CTCGTGCAAC AACGCGGTCA
GCATGGGGGA GTGCCCAACA GTTCCCGCCA AGCCGTTTCT TGGATGATAT TCCTGCTGAG
CTCATTGAGT GGCGGCGCCA GTATTCCACA ACCGAGGTCC TCATGAATTC TGGATCACGG
TCGGGATCCT CCGGTTATAG CGGTGACCGT TCCCGCGCAT TGCGTGACGA CGATGACTTT
GGTGCACCGA TTGGTTCCGG GCGCAGTCAG GGCTTGCCGG CGTGGAAGAA GTCAGCTGCG
GCGCCGCCCC CAGCACGGGT TGGTGCACCC CAAGCGAAAG ATGAGGCAGA TATCCCGGTC
TTGCGTCAAG GCGACCGTGT GCAGCATGAG ACCTTTGGGG TTGGGCGAGT TGTGATGGTT
GCTGGGCAGG GGCGCAATGC CACCGCGACG GTCCACTTCG AAACTGAGGG TGAGAAACGG
CTCCTGCTTC GCTACGCTCC CGTGACACGC ATCGACCAAT AG
|
|---|
| Protein sequence | MDSLFGHLPS VTGPTSQAAL PRLAPGGAWT QPTPDEPRSA FVDDAQALLT GLNPQQQAAV
EHAGSPLLIV AGAGSGKTRV LTHRIAWLLA TGRAWPSEIL AITFTNKAAA EMRERVIQIV
GPSAQRMWVS TFHSTCVRIL RAHASALGLK STFSIYDSAD SQRLLGLVVR ELELDPKRFT
PKGVAQRISG LKDELMTPAD HLVRAGSNDY EVMIGRIFER YQQRLATAHA LDFDDIIVRT
VDLLRQFPEV RDHYQRRFRH ILVDEYQDTN HAQYALIREL VGTDHDGLTA SELTVVGDSD
QSIYAFRGAS IRNILEFEQD YPQARTILLE QNYRSTQTIL SAANAVISRN NDRRPKKLWT
AAGDGPAIVG YVGDTEHDEA RWIAREIDSL MDKHGVRPGD VAVFYRTNNQ SRALEEVLIR
VGLPYKVVGG TRFYERKEIK DVLAYLHAVN NSDDDVNVRR IINVPKRGLG DRSEAVIAQF
AAAHDISFAD ALRRIDTIPG LTARSTKPAR AFAQLLDTWQ QNVDQGVGPA GLISAILDDT
GYLELLRDSE DPQDQSRVEN LAELHAVAME YEKEDPEGGL GGFLERVSLV ADADSVPSSD
DAGHEDTPVV DPGVITLMTL HTAKGLEFPV AFLTGLEDGT FPHMRALLDD SELSEERRLA
YVGVTRARER LYLTRATTRS AWGSAQQFPP SRFLDDIPAE LIEWRRQYST TEVLMNSGSR
SGSSGYSGDR SRALRDDDDF GAPIGSGRSQ GLPAWKKSAA APPPARVGAP QAKDEADIPV
LRQGDRVQHE TFGVGRVVMV AGQGRNATAT VHFETEGEKR LLLRYAPVTR IDQ
|
|---|
| |