Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_0564 |
Symbol | |
ID | 8379749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | - |
Start bp | 611139 |
End bp | 612383 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645003299 |
Product | transcriptional regulator, LacI family |
Protein accession | YP_003160531 |
Protein GI | 256831804 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.432352 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0264238 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACCA CGAAACCCAC ACTCTCCACC GTGGCACGCC ACGCAGGAGT GTCCATCTCA ACCGCATCTC TCGCCTTCTC CAACTCCGGA CCCATCGCCG AGGCCACCCG CACAAAAGTA CTCCACGCAG CCCGCGAACT CGGCTACACC GGTCCCTCTG CGCTCGGACG ACAACTACGA TCCGGAAAAA CCGGCATCGT GGGGGTTGTC ATTGGCGATG CAATACGGCG AGGCTTCCGT GACCCGGTTC TCGTCTCCGC TCTGGACGGG CTCGTCAGAC GACTAGGCGA ACACGGCCTT GGCGTTCTCC TCATTCCCGC TGACCACCCC ACAAACACCA CGGCACAGCA ACCCCATGAT CACGTCCACC CCCTGATCCG TTCTACTGCC ATGGACGCAG CGATTCTCCT ATGGGGAGGA CATGCTCACG ACCCGACCTA CCACGCCCTG GCCGAACGGC ACATCCCGAT CATCATTTCT GAAGGTCAGC ACGTCGACGG ATCTTCCTAC ATCGAACTGG GAGACCGCGC CGCAATCACA GCGCTGACCC AGCACCTTGT TGATCTTGGA CACACACGCA TTGCCTGCGT ATCACTATCG CTCGGAGATG GACACCATGG GCTCACCCAC ATCCACGAAC TGACCGAACG CTACAATCAG GCACTTACTC ACGCCAATAA CAACAACTCA AATACCACAC CAGCGCATGC TCGCACCCCT CACCTTGCGG GCCGTCCCCC TTATGCTCTC CCCTCGTGGG GCCGTCTGCA CGGAATGCTT GACGCAGGGG TCACACCAAC CCTGATCTGG GAGGCACAAG CTTCCCTTGT CGAAGAAGGA CACCGAGCCG GCGCCGCTTT GCTGGACCCC ACCAACTACC CTGACGGTCA ACGCCCCACC GCGATCATGG CACACTCAGA CCTTCTTGCG GCAGGAGTGC TCCAACAAGC ACGTGACATG GGCTTTCGGG TCCCCGAAGA CCTTTCCATT ACCGGATTTG ATGGGGTGCA CCTTCCCTGG CTCGCAGGGG AACAACTCAC CACTGCACGA CAACCACTAC CGGGCAAAGG GGAAGCTATC GCACAAGCTG TCCTCGACGT CCTTGACAAC AACACTGTCA CCAGCCAACA CTTACCCGTA CCACCAGTGC TTGGCGATAC AAGCGGCCCC GTCCCCACCA CACTGACGGA GCACAATAAA CGCGACCACA ACAATTCCAC AAAAAACGAC ACGGCCACAT TGTGA
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Protein sequence | MSTTKPTLST VARHAGVSIS TASLAFSNSG PIAEATRTKV LHAARELGYT GPSALGRQLR SGKTGIVGVV IGDAIRRGFR DPVLVSALDG LVRRLGEHGL GVLLIPADHP TNTTAQQPHD HVHPLIRSTA MDAAILLWGG HAHDPTYHAL AERHIPIIIS EGQHVDGSSY IELGDRAAIT ALTQHLVDLG HTRIACVSLS LGDGHHGLTH IHELTERYNQ ALTHANNNNS NTTPAHARTP HLAGRPPYAL PSWGRLHGML DAGVTPTLIW EAQASLVEEG HRAGAALLDP TNYPDGQRPT AIMAHSDLLA AGVLQQARDM GFRVPEDLSI TGFDGVHLPW LAGEQLTTAR QPLPGKGEAI AQAVLDVLDN NTVTSQHLPV PPVLGDTSGP VPTTLTEHNK RDHNNSTKND TATL
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