| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0542 |
|---|
| Symbol | |
|---|
| ID | 8379727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 585576 |
|---|
| End bp | 586916 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645003274 |
|---|
| Product | NADH dehydrogenase subunit D |
|---|
| Protein accession | YP_003160509 |
|---|
| Protein GI | 256831782 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.502265 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.442373 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAC CCACCCAAGG CCCCCACGCC ACCCGCAATG TCTTTGACAC CGACGACGTC
TCCTTCGAAG CAATGGGAGG CGACTGGGAT GATGTCGCTG CACGCATCCG CGAACTCGGT
GAAGAACGCA TCGTCGTTAA TATGGGACCT CAACACCCCT CCACCCACGG TGTGCTGCGG
CTCATGTTGG AAATGGACGG CGAATACGTC ACTGAAGCGC GCGCAGGAGT CGGCTACCTG
CACACGGGTA TCGAAAAGAA CATGGAGTAC CGAACCTTCA CTCAAGGTGT GACGTTCTGT
ACCCGCATGG ACTACCTTGC CTCCTTCTTC CAAGAAGTTG CCTACTGCCT CGCGGTCGAA
AGGCTCCTCG GAATAGAAGC ACCCGAACGC GCGCAAATCA TCCGCGTGAT CCTCATGGAA
CTGAACCGTA TTTCCTCGCA CTTCGTTTGC TTAGGAACAG GCGGAAACGA ACTCGGGGCC
ACCACCGTGA TGACAGCAGC CTTCACTGGT CGTGAAGAGA TCCTTCGAAT CTTCGAGTCC
GCATCCGGGC TCCGCATGAA CAATGCATTC ATTCGGCCCG GGGGAGTAGC CCAAGACGTC
CCCGCAGGGT TCGTGGACGA GGTGCGCTCA CGGCTGCCAA AAATCGAAAA ATACCTCACC
GACCTCGCCG ACCTGTGCCT AGGAAACCCC ATCTTCAAAC TCCGGACCGT CGGTGTCGGA
CACCTCAACC TCGCCGGAGC CATGGCGCTC GGCATCACCG GCCCCATTTT GCGGTCAGCC
GGACTCCCAT ACGATGCCCG CAAAGCCAAA CCCTACTGTG GGTACGAAAC CTACGACTTC
GACATCCCAG TCTCCAACGA CGCAGACTCC TACGCCCGGG TGGTCCTGCG AGCCGAAGAA
TGCTGGCAGT CACTGCGCAT CATCCGTCAA GCACTCGACC GCCTTGACAA CACCGCAGGA
GCCCCCGTCA TGGTCGAGGA CAAAAAAATC GCCTGGCCCG CACAACTGGC AATCTCCTCC
GACGGACAAG GCAACTCCTT CGAACACATC CGAAAAATTA TGGGCAGCTC CATGGAAGCC
CTCATCCACC ACTTCAAACT CGTCACCGAA GGGTTCCGAG TCCCGGCAGG CCAAGTCTGG
CAAACCGTCG AACACCCCCG TGGAGAGCTT GGAGTTCACC TCGTCTCCGA TGGCGGAACA
CGCCCCTACC GGGCGCACTT CCGTGACCCG TCCTTCAATA ACCTCCAAGC AACGTCCATC
ATGTGCGAAG GCGGCCAGGT CGCTGACGTC GTTGTTGCCG TGGCTTCAAT TGACCCCGTG
ATGGGAGGCG TCGACCGATG A
|
|---|
| Protein sequence | MSAPTQGPHA TRNVFDTDDV SFEAMGGDWD DVAARIRELG EERIVVNMGP QHPSTHGVLR
LMLEMDGEYV TEARAGVGYL HTGIEKNMEY RTFTQGVTFC TRMDYLASFF QEVAYCLAVE
RLLGIEAPER AQIIRVILME LNRISSHFVC LGTGGNELGA TTVMTAAFTG REEILRIFES
ASGLRMNNAF IRPGGVAQDV PAGFVDEVRS RLPKIEKYLT DLADLCLGNP IFKLRTVGVG
HLNLAGAMAL GITGPILRSA GLPYDARKAK PYCGYETYDF DIPVSNDADS YARVVLRAEE
CWQSLRIIRQ ALDRLDNTAG APVMVEDKKI AWPAQLAISS DGQGNSFEHI RKIMGSSMEA
LIHHFKLVTE GFRVPAGQVW QTVEHPRGEL GVHLVSDGGT RPYRAHFRDP SFNNLQATSI
MCEGGQVADV VVAVASIDPV MGGVDR
|
|---|
| |