| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0101 |
|---|
| Symbol | |
|---|
| ID | 8379298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 112170 |
|---|
| End bp | 113486 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645002836 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003160080 |
|---|
| Protein GI | 256831353 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.494877 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.060225 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCACAC GCAACACACG ATTCGCCGTT GGCGCTCTCG CAGGAACGCT CGCCCTCACA
CTCACAGCAT GCGGAGGAAG TGACAGCGAC AACGCCCCCA CACAAGCCCC CACGAACGCA
TCCGGTGAAC TCTCCGGAGA ACTTACCGTA TGGGCATGGG ACCAAACCAT CACCGACGTC
GCCGAGGCCT TCACTGCTGA ACACCCTGAC GTCACCGTCG ACGTCGTCAA CGTCGGAACC
GGAAATGACC AGTACGTTGC CCTCCAAAAC GCTGTCGCAG CAGAATCCGG CGGACCCGAC
CTGGCGCAAA TCGAATACTA CGCAGTCCCA CAATTCTCCA TCGGACAAGC ACTCGCCGAC
ATCGGCCCCA TGGGGGCAGA TGAACTCGAC GGAACATTCA CCACAGGCCC ATGGTCTGCC
GTCGCACAAG GCGACAACGT GTGGGGGCTC CCCCTCGACT CCGGTCCTAT GGCCATGTTC
TACAACAAGG AAGTCTTCGA CGCGAACAAC GTCGACGTCC CCACCACATG GGACGAATTC
CTTGACGCCG CACGAACGCT GAAAGAACAA GGCATCTACA TTGTTAACGA CACTGGAGAT
GCAGGCTTCA CCACCTCCAT GATCTGGCAG GCCGGTGGGC GCCCCTACCA AGTCAACGAC
ACCACAGTGT CCGTGGACTT CGCCGATGAA GGGACAGCCA AATTCGCCGA ACTGTGGCAA
ACCATGATCG ACGAAGAACT CGTCGCCCCC ATAAGCTCGT GGAGCGACGA ATGGTACCAA
GCCCTCGGGG ACGGGAGTGT CGCATCGCTC GTCATCGGCG CCTGGATGCC CGGCAACCTC
GAAACCGGTG TCCCGGCAGG AGCAGGTAAA TGGGCAGTCG CTGACATGCC ACAATGGTCA
GACTCAGAAT TCACCACCTC AGAAAACGGT GGAAGCTCCA TGGCCGTCAT GAAAGGCAGT
GACAACCAAG CGCTGGCCTA CGAGTTCCTC GAATTCACCG CAGCAGGCGA GGGAATCGAC
ATCCGAGTCG ACGGTGGCGC CTTCCCCGCA ACAGTTGACA CCCTCAACGA ACCAGGATTC
CTCGACCGAG AATTCGAGTA CTTTGGCGGA CAAAAAGTCA ACGAAGTACT CGCCAAATCA
GCAGAGGGAG TCGCCGAAGG CTGGCAGTAC CTTCCCTTCC AGGTTTACGC CAACTCCGTA
TTTAACGACT TCAGCGCGAA CGCCTACAAC GGCAGCACCC CACTAGCGGA CGCATTGACC
CAATGGGGTG ACGCATCGGC AACCTACGGT GGCCAACAAG GGTTCACCAT CGAATAG
|
|---|
| Protein sequence | MATRNTRFAV GALAGTLALT LTACGGSDSD NAPTQAPTNA SGELSGELTV WAWDQTITDV
AEAFTAEHPD VTVDVVNVGT GNDQYVALQN AVAAESGGPD LAQIEYYAVP QFSIGQALAD
IGPMGADELD GTFTTGPWSA VAQGDNVWGL PLDSGPMAMF YNKEVFDANN VDVPTTWDEF
LDAARTLKEQ GIYIVNDTGD AGFTTSMIWQ AGGRPYQVND TTVSVDFADE GTAKFAELWQ
TMIDEELVAP ISSWSDEWYQ ALGDGSVASL VIGAWMPGNL ETGVPAGAGK WAVADMPQWS
DSEFTTSENG GSSMAVMKGS DNQALAYEFL EFTAAGEGID IRVDGGAFPA TVDTLNEPGF
LDREFEYFGG QKVNEVLAKS AEGVAEGWQY LPFQVYANSV FNDFSANAYN GSTPLADALT
QWGDASATYG GQQGFTIE
|
|---|
| |