| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0024 |
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| Symbol | |
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| ID | 8379224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 26505 |
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| End bp | 28241 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645002761 |
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| Product | thiamine pyrophosphate protein TPP binding domain protein |
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| Protein accession | YP_003160006 |
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| Protein GI | 256831279 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.338176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.262087 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTACTG TCGCTGAGAA CCTGATTGAC ACCCTTGTTG CCAATGGGGT GGAGCGCATG
TATGGGATTT CCGGGGATTC GTTGAATGGG ATCACGGAGG CGATTCGCCA GCATGAGGGG
ATCGCGTGGG TGCCGGTTCG TCATGAGGAG TCGGCGGCGT TTGCTGCGGG TGCGGAAGCG
GAGATGTCGG GTACCTTGTC GGTGTGTGCA GGCAGTTGTG GGCCAGGAAA TTTGCACCTG
ATTAATGGGT TGTATGACGC GCAACGTAAT CGTGTTCCCG TGTTGGCAAT TGCCGCCCAC
ATTCCTACCG CCGAGATTGG GACCGAGTAT TTTCAGGAGA CCCGCCCGCA GGATCTGTTC
CGGGAGTGTT CTGTGTATTG CGAGTATGTG GCAAGCCCGG AGCAGATGCC TCGGTTGTTG
CGCATCGCGA TGCGCGCTGC CGTAGAGCAG CGCGGGGTTG CGGTTCTTGT GATTCCTGGT
GATGTGGCGT TGGCTGACAT TCCCTCGAAT GAGGTGACGG TAGTGACTGC CACGCAGTCG
TCAACGACGC CTGCGCCCGT ACAGATCCAG CAGGCAGCGG ACGCACTGAA TGCCGCATCG
TCTGTCACGA TTTTGGGGGG TGCTGGGACG AAAGACGCGC ATACGCAGGT GCGGGCATTG
GCAAAGCGGT TGTCAGCCCC TGTCGTGCAC GCGTTGCGGG GTAAGGAGTA CTTGGAGCCG
GATAACCCGT ACGATGTGGG GCTGACCGGG CTGCTGGGGT TCGCGTCCGG GTATCAGGCC
ATGCAGGACG CCGATGCGCT CCTGTTGTTG GGCACGGATT TCCCGTACCC GCAGTTCATT
CCCGAGAAGA ACACCGTCAT TCAGGTGGAT ATTCGTGGGG AACATATTGG GCGCCGGTAT
CCGGTGGATA TTGCGTTGCG GGGGGATGTG AAATCCACGG TGGATGCGCT CCTTCCTCAC
CTTGATGCTA AGGGTGACAA GCACCTGAAG GCTGCGCGGA AACAGTATGA GAAGAGCCGT
GCTCAACTTG ATGATGTGGC CACCCCAGAA CCTGATGGTG TGGACATTCA CCCGCAGTAC
CTGACCCGTG TGCTTGACCA GATTGCCCCT GACGATGCGG TGTTTATCCC CGATGTTGGG
TCACCTGTCA TGTATGCGGC CCGGTACCTG ACCATGAATG GGAAGCGGCG TCTCATTGGG
TCGTTTAGTC ACGGAACAAT GGCGAATGCG TTGCCGCAAA GCTTGGGGGT TCTCAGCCAT
GACCGTACCC GCCCCACGGT GGCGATGTGC GGTGATGGTG GGTTGTCTAT GCTGCTGGGG
GAGTTGTTGA CAGTAGCGCA GCAGAAACTT CCAGTGAAGA TGGTGGTGTA TAACAACTCG
TCACTGAATT TTGTGGAACT AGAAATGAAA GCAGCGGGGA TTGTCAACCA CGCCACCGAC
TTGGAGAACC CAAATTTTGC GGCTCTTGCC CAGGCGGTGG GGATCACGGG GATTCGGGTG
GAGAACTCTG GCGATGTGGA GGCTGCGTTA CGTGAAGCGT TCGCTCATGA GGGACCGGTC
CTCGTTGATG TGGTCACTGC CCGCCATGAA CTGTCGATGC CGCCCACGAT CACTGCGGAA
CAGGCTAAGG GCTTCACGTT GTATGCGATT CGCACAGTGT TATCAGGGCG CGGTGACGAG
CTCATTGATT TGGCGGCCAC GAACAAACGC CGGTTGTTCC CGTCGCGCAA AAAGTAG
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| Protein sequence | MATVAENLID TLVANGVERM YGISGDSLNG ITEAIRQHEG IAWVPVRHEE SAAFAAGAEA
EMSGTLSVCA GSCGPGNLHL INGLYDAQRN RVPVLAIAAH IPTAEIGTEY FQETRPQDLF
RECSVYCEYV ASPEQMPRLL RIAMRAAVEQ RGVAVLVIPG DVALADIPSN EVTVVTATQS
STTPAPVQIQ QAADALNAAS SVTILGGAGT KDAHTQVRAL AKRLSAPVVH ALRGKEYLEP
DNPYDVGLTG LLGFASGYQA MQDADALLLL GTDFPYPQFI PEKNTVIQVD IRGEHIGRRY
PVDIALRGDV KSTVDALLPH LDAKGDKHLK AARKQYEKSR AQLDDVATPE PDGVDIHPQY
LTRVLDQIAP DDAVFIPDVG SPVMYAARYL TMNGKRRLIG SFSHGTMANA LPQSLGVLSH
DRTRPTVAMC GDGGLSMLLG ELLTVAQQKL PVKMVVYNNS SLNFVELEMK AAGIVNHATD
LENPNFAALA QAVGITGIRV ENSGDVEAAL REAFAHEGPV LVDVVTARHE LSMPPTITAE
QAKGFTLYAI RTVLSGRGDE LIDLAATNKR RLFPSRKK
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