Gene Jden_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_0004 
Symbol 
ID8379204 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp4618 
End bp5133 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content59% 
IMG OID645002739 
Productprotein of unknown function DUF721 
Protein accessionYP_003159986 
Protein GI256831259 
COG category[R] General function prediction only 
COG ID[COG5512] Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00476655 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0907524 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACCT ATGACATTCG TGGGTTACCT TCTCAGATTG AGGTCACTCC CCCAGTTGCG 
GTAGCAACAG CCGCGTTGAA TCGGGCGAAG GCTGCCGCGC GTGCGCGAGG GTTTCGGCCA
TCGAGTGTTG CTCAACGAGA CGATGCGGTG TCCGGTGCTG CTCGGACGCG ACGTGACCCG
CAATTGTTGG GTGAGGCGTT GGGAACGTTG TTGACTGAGC GTGGGTGGAC AGCTGATGTC
GCGGTGGGCA ATGTTGTGGC ACGGTGGGCT GAGATTGTGG GAACTGAGAT TGCAGAGCAT
TCCACTGCAG AGCAGTTTGT TGATGGTGTG TTGTTTGTTC GGGCGCATTC CTCAGCCTGG
GCCACCCAGT TGCGTTTTCT TGCTGCCAAT ATTCTGGCTG CGATTGCTCG GGATGTGGGT
GAGGGTGTGG TGGAGGAGTT ACGGGTGGTC ACTCCTGATG CGCGTACCGG GTCGAAGGGG
AGATTGCGGG TTCAAGGTGG TCGGCCGCGA CGCTGA
 
Protein sequence
MATYDIRGLP SQIEVTPPVA VATAALNRAK AAARARGFRP SSVAQRDDAV SGAARTRRDP 
QLLGEALGTL LTERGWTADV AVGNVVARWA EIVGTEIAEH STAEQFVDGV LFVRAHSSAW
ATQLRFLAAN ILAAIARDVG EGVVEELRVV TPDARTGSKG RLRVQGGRPR R