| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4180 |
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| Symbol | fliF |
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| ID | 3936669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 4288852 |
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| End bp | 4290603 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637906566 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_512122 |
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| Protein GI | 89056671 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGACC ACATCGGGCC AGAACGGCTC GGCATGAAAG GGGTCGTCTT GAACGCACTG
CTTGAGATCT GGAATGGAAT GAATGGCCGC CGCCGGGGGC TGTTGATTGG TGGAATTGCC
GCGTTGGCCG TGGTGTTGGT GATTTTGACG CGAATTGCAT CTCAACCCTC ATTCCAACTT
TTGTATAGTG GGTTGGATCC TGCCGCTGCC GGCGAAGTCG TGGATGCTTT GGCTGCACGG
GGCGTGGCCC ATCGAATCGA CGGCGACCAG ATTTTTGTCG ACGCGACCCA GCGCGATGAA
CTTCGCATGG CTTTGGCGGG CGAAGGGCTG CCGGCCAATG GGCCCCAGGG GTACGAACTG
CTCGATTCGC TGTCTGGCTT CGGAACCACC TCGCAGATGT TTGACGCCGC CTACTGGCGC
GCGAAGGAGG GGGAGCTGTC GCGGACCATT CTTGCCTCGC CGGCTATCCG AGCGGCCCGT
GTTCACATCG CCAACCCGTC CTCCGACCCA TTTCAGCCAA CCAATGAAGT CACCGCGTCT
GTCGCGATTC GTCCGGCATC TGGCGGTCTT GCGCCTGGTC ATGCCCATGC GCTCCGGTAT
CTGGTCGCCT CGTCCGTGCC TGGCCTGCGA CCCGAGAATG TAACGGTGAT CGATGCCGAT
TCGGGGCAGG TTCTCGGCGG GCAGGGGCAG ATGACGCCCG CTGCCGATGC TGCTGGGCGG
GCGACGACCC TGCAGCAGAA CGTCGAACGC TTGCTGGCGG CTCGTGTCGG ACCAAGCAAC
GCTGTGGTCC AGGTTTCAGT TGAGTTGGAG ACCGCCCGCG AGACGATTCT TGAACGCGTC
ATCGACCCCG AAAGCCGTGT GATCATTGCG ACGGACACGG AGGAAATGGA CAACGCGTCG
ACTGATGGTG CCGCTGCGGG CGTGACCGTT GCCTCTAACT TGCCGGACGG TGATGGCGCA
GCAGGCGAAG GATCTTCTGC GCAAACCACC GAATCGCGGG AACGCGTGAC GTTTGATATG
TCGGAACTGC AGCGCGAGGT AGAACGGGAA CCGGGTGACA TCCGCCGGAT CACGGTCGCG
GTGCTCGTCA ACGGAGTGGA AGAGATCAAT GCCAGCGGTG TTGCGGAAAC GATCCCACGC
CCGGCCGCAG AGCTTGACGC CTTAACGGAG CTCGTCCGAT CTGCGGTTGG CTACGACGAG
GCGCGGGGGG ATATTGTCAC GATCCAGTCG ATGGCATTCG ATGCGGCAGC TGCCACGGAA
CTGACCGAAG CGGGCTTTGC CGATCGCCTA AATCTCGACG TAGGTCAGAT CGTTCAGACA
TTGCTGTTGG CGGCCGTCGC CCTGGCGATC GCATTTGGAT TGCTGCGTCC GCTTTTGGCA
CGCTCAGGCG GCGACTCACT GAACACATTG CCGCCTCTTG AGCCGACCAA CGGCTTACCT
GCGCCGTCCG ATGGCGCTGT CTCTGGCGAT ACGTCTCTGC CTACAACCAG TACCGCTGAT
GTGCCCGAGA TTACCATGGC ATCAACCGCG CCCAAGGAGC TGCCTCCTCT TCCTGCGGTT
TCGCAAATGG GCTCTGCCTT CGATGATGCC CTTCCAATGA TGATGGCCGG ATCATTGCCC
GGAGACCTTG AGCAGAATCT TGAGGACATG GATCCCGTTG ATCGCCTCCG CCTTCTCATT
CAGGAGCGGG AGGAAGAGAC GGTTCAGATC TTGCGGAGTT GGATGAATGA AGATGAGGAA
GCGGCGAGAT GA
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| Protein sequence | MSDHIGPERL GMKGVVLNAL LEIWNGMNGR RRGLLIGGIA ALAVVLVILT RIASQPSFQL
LYSGLDPAAA GEVVDALAAR GVAHRIDGDQ IFVDATQRDE LRMALAGEGL PANGPQGYEL
LDSLSGFGTT SQMFDAAYWR AKEGELSRTI LASPAIRAAR VHIANPSSDP FQPTNEVTAS
VAIRPASGGL APGHAHALRY LVASSVPGLR PENVTVIDAD SGQVLGGQGQ MTPAADAAGR
ATTLQQNVER LLAARVGPSN AVVQVSVELE TARETILERV IDPESRVIIA TDTEEMDNAS
TDGAAAGVTV ASNLPDGDGA AGEGSSAQTT ESRERVTFDM SELQREVERE PGDIRRITVA
VLVNGVEEIN ASGVAETIPR PAAELDALTE LVRSAVGYDE ARGDIVTIQS MAFDAAAATE
LTEAGFADRL NLDVGQIVQT LLLAAVALAI AFGLLRPLLA RSGGDSLNTL PPLEPTNGLP
APSDGAVSGD TSLPTTSTAD VPEITMASTA PKELPPLPAV SQMGSAFDDA LPMMMAGSLP
GDLEQNLEDM DPVDRLRLLI QEREEETVQI LRSWMNEDEE AAR
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