| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4021 |
|---|
| Symbol | |
|---|
| ID | 3936509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 4124992 |
|---|
| End bp | 4125375 |
|---|
| Gene Length | 384 bp |
|---|
| Protein Length | 127 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637906406 |
|---|
| Product | sigma-24 (FecI-like) |
|---|
| Protein accession | YP_511963 |
|---|
| Protein GI | 89056512 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.785989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGATG TCATGGCCAC CCTTTGGCGC AAAGCACATA TGTACGATCC GTCCCGCGCC
TCTGTGGCGA CTTGGATCTT TACGATTGCC CGCAATCGAA AGATCGATCT GCTGCGCCGC
TATGCCCGCC CTGACCCGGA AGAATTGCCC TGGGGCCCCG AACAGGCCCC CAATCCGGCC
GATGTCATTG CCCTGCAACA GGACACAACC CGCCTGTCCC AGGCCCTTGC CACCCTGCCC
GAGAAGCAGC GAGAACTTAT CAAACACGCC TATTTTGGAG ACCTGAGCCA TTCTGAAATC
GCGATAGAAA CCGGTTTGCC CCTTGGCACA ATCAAGTCGC GGATTAGGTT AGCGCTCGAT
CGACTTAGAC ACTCGATGAA TTGA
|
|---|
| Protein sequence | MQDVMATLWR KAHMYDPSRA SVATWIFTIA RNRKIDLLRR YARPDPEELP WGPEQAPNPA
DVIALQQDTT RLSQALATLP EKQRELIKHA YFGDLSHSEI AIETGLPLGT IKSRIRLALD
RLRHSMN
|
|---|
| |