Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3810 |
Symbol | |
ID | 3936290 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 3896567 |
End bp | 3897448 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637906188 |
Product | LysR family transcriptional regulator |
Protein accession | YP_511752 |
Protein GI | 89056301 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00430923 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATCAAAA GTCGGGTGAC CTTCAAGCAA CTTGAAGCCT TCGTTTGCGT CGTGGATACG GGCACGTTTC GCAAAGCGGC CGGTATTCTC GGGACGACGC AGCCCAATAT CTCCACCCGG ATCGCCGCGC TGGAGGACGT GCTGGGGACC ATCCTGATGC ACCGGGATGC GGGCTCAATT CGCGTGACCG ACAAAGGAGC GGAACTGTTG GAGGCCGCAC GGGAAATCCT GCGGGCCGGC GAGAACTTTT TGGAAATCGC TGGCCGCCAA GACCTGATTG AAGATCGCCT CCGCCTTGGC GTGACAGAAC TTGTCGCCTG CACCTGGCTC CATGACTTCT TGCGCGCGTT CAAAGATCTT TATCCAGCGG TGCGGGTGGA GTTGGACGTG AACCTGTCGA CAGAGATCGA GAAGGCGCTG ATCACCCATC AGGTGGATCT GGCGCTGCAA ACGGGGCCCT TCGCACGGCC TGTTCCCGGC ACCTTACCGC TTGGCGACTA TCCCTATTGC TGGGTTGCAG CGCCGTCCCT GACCCCGCCC GCAAGCTTTG CGGCGCTCTT CGACGGTCCT GTGATCAGCC ATGGTCGCGA CACGCGCGCC TCCCGCGCAT TGGCGGAGCA CGCGCGGGCG GAGGGGGTAG CCGTCAACCA GATCGTCCAT TCCAGCAGCC TGACATCTTG CGTCGCCATG GCCGTAGACG CCATGGGCCC GGCGCTGTTG CCGCGTCTGA TGGTGGAGGA CGCGATAGCA CAGGGGCGGT TGTCTGAGTT CACCTGCGGT TGGCTGCCGG ATCAGTTGCA GCTCTTCGCC CGCTTCGATC CCCGCCGCAC ACCGCAATTC GTCCGCGCCG CAGCCGACCT GGCCGTCGAG ATCGCAGGAT AA
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Protein sequence | MIKSRVTFKQ LEAFVCVVDT GTFRKAAGIL GTTQPNISTR IAALEDVLGT ILMHRDAGSI RVTDKGAELL EAAREILRAG ENFLEIAGRQ DLIEDRLRLG VTELVACTWL HDFLRAFKDL YPAVRVELDV NLSTEIEKAL ITHQVDLALQ TGPFARPVPG TLPLGDYPYC WVAAPSLTPP ASFAALFDGP VISHGRDTRA SRALAEHARA EGVAVNQIVH SSSLTSCVAM AVDAMGPALL PRLMVEDAIA QGRLSEFTCG WLPDQLQLFA RFDPRRTPQF VRAAADLAVE IAG
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