| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3806 |
|---|
| Symbol | |
|---|
| ID | 3936286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3891858 |
|---|
| End bp | 3892697 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637906184 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_511748 |
|---|
| Protein GI | 89056297 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0684403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00159675 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTCC TCCGCGCCCT TGCCCGCCAC CCGGCAGGCC GCATCAGCCT TATCATCATC
GGGTTGCTCA GCATCGCCGC GCTGCTTGGG CTGTTTGGCC TGACGCCCCA CGATCCACTT
GCCCAGGACC GCCTCGCGCG CCTGCAAGCG CCCAGCAGCA CATATGTTTT GGGAACCGAC
CTCTTTGGCC GGGACATGCT CAGCCGGTTG ATGGTGGGGG CGGGGCAATC CTTCATGGTC
GCCCTGCTGT CCGTCACCCT CGCCGCGACG CTTGGCACGA TCCTTGGGCT CACGGCGGCG
TGGTTCGGCG GTCTCTGGGA TGGGGTGGCG ATGCGCCTGA TGGATGTGCT GCTGGCTTTT
CCCGCCATCC TTCTGGCCCT GCTGATCATC GCGATCCTTC AAGCCGGTGT CCTGTCATCG
GTGCTTGCCA TCGCGGTCGT CTACACCCCG ATCTTCACCC GTGTCGCGCG GGGCCCGGCG
CTGTCGATCA AGACGCGCAG CTTTGTCGAT GCCGCGCGCA CGTTTGGCAG CCCCACGACT
TACATTCTGT CGCGTCATCT GTTGGGCAAC CTTGTGGCCC CGCTGACCGT GCAGTTCACG
CTCGCCCTGG CCTGGGCACT GCTGACGGAG GCCGCACTCA GCTTCCTCGG TCTCGGCACA
CAGCCGCCCA ATCCATCCCT CGGCCTTATG CTGTCGGACA GCCGCAACCT GATGGAAATG
GCGCCGTGGC TGCTGATCTA CCCCGCGGCC ACGATCATGC TGGCGGTGCT GGGGTTCAAT
CTTCTGGGGG ATGCTTTGCG GGATATCACA GATCCGCGCG CGCAGGACGG TCGCCCATGA
|
|---|
| Protein sequence | MTLLRALARH PAGRISLIII GLLSIAALLG LFGLTPHDPL AQDRLARLQA PSSTYVLGTD
LFGRDMLSRL MVGAGQSFMV ALLSVTLAAT LGTILGLTAA WFGGLWDGVA MRLMDVLLAF
PAILLALLII AILQAGVLSS VLAIAVVYTP IFTRVARGPA LSIKTRSFVD AARTFGSPTT
YILSRHLLGN LVAPLTVQFT LALAWALLTE AALSFLGLGT QPPNPSLGLM LSDSRNLMEM
APWLLIYPAA TIMLAVLGFN LLGDALRDIT DPRAQDGRP
|
|---|
| |