| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3627 |
|---|
| Symbol | |
|---|
| ID | 3936105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3699816 |
|---|
| End bp | 3701471 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637906003 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_511569 |
|---|
| Protein GI | 89056118 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.108497 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCT ATCAATACGT GTACCACATG GACGGTGTTT CCAAGACCTA CCCCGGTGGC
AAAAAGTGCT TTGAAAACAT CCGCCTCAGC TTCCTGCCCG GCGTGAAGAT CGGTGTCGTG
GGCGTCAACG GCGCCGGTAA GTCGACGCTG ATGAAGATCA TGGCGGGCCT CGACAAGGAC
TTCACTGGCG AGGCGTGGTC CGCGGAGGGC GCGCGGGTAG GCTACCTGCC GCAGGAACCG
CAGCTCGACG AGACGCTGAC GGTGCGTGAG AATGTCATGC TTGGCGTGGC GGAAAAGAAG
GGCAAGCTGG ACCGGTTCAA TGAACTGGCG ATGAACTATT CTGACGAGAC CGCCGATGAA
ATGGCCGCCC TCCAGGATGA CATCGACGCC AACAACCTCT GGGATCTCGA TAGTCAGATC
GACGTGGCGA TGGAGGCGCT GCGCTGCCCC CCCGATGATG CACCGGTTGA GACGCTGTCG
GGTGGTGAGC GCCGGCGTGT GGCGCTTTGC AAACTGCTGC TGGAAGCGCC CGAAATGCTG
CTTCTGGACG AGCCCACCAA CCACCTCGAT GCCGAAACGA TTGCCTGGCT GCAACAGCAT
CTGATCGACT ACAAGGGCAC GATCCTGATC GTCACCCACG ATCGTTATTT TCTTGACGAT
ATCACCGGTT GGATTCTGGA ACTCGACCGT GGGCGCGGCA TCCCCTACGA GGGCAATTAC
TCCGCGTGGC TGGAGCAGAA GGCCAAGCGG CTGGAGCAGG AAGCCCGCGA GGACAAGAGC
CGCCAGAAAA CGCTGGAGCG CGAGCTGGAA TGGATCCGCC AGGGGGCCAA GGCCCGCCAA
GCGAAGCAAA AGGCTCGGAT CAACGCCTAT GAAGATCTCG CCGGTAAATC CGAGCGGGAG
AAGCTGTCGC GCGCCACGAT CATCATCCCC AACGGGCAAC GTCTGGGTGG AAAGGTTATT
GAAATCAATA ACCTGAAGAA GGGCTACGGC GACAAGCTGC TGATTGAAGA CCTCACCTTC
GCGCTGCCCC CGGGCGGTAT CGTGGGCGTC ATCGGCCCCA ACGGCGCGGG CAAATCCACG
TTTTTCCGTA TGCTCACCGG TCAGGAAAAG CCCGACGCCG GCACGCTGGA ATACGGCGAT
ACGGTGGATC TCGCTTACGT CGACCAATCG CGCGACGCGC TGGCGGGCGA CACGACGGTC
TGGGAAGAAA TCTCGGGCGG GGCGGAGATC ATCGAGCTTG GCGACGCCAC CATGAACTCC
CGCGCCTATT GCTCGGCGTT CAACTTCAAG GGCGGCGACC AGCAGAAGAA GGTTGGGCAA
CTCTCGGGCG GTGAACGCAA CCGTGTCCAC ATGGCGAAGC TGTTGAAATC AGGCGGAAAC
GTGCTGCTGC TCGACGAGCC CACCAACGAT CTGGACGTCG AAACCCTCCG CGCATTGGAA
GACGCCCTGA CCGATTTCGC AGGCTGCGCC GTCGTCATCT CTCACGACCG CTTCTTCCTC
GACCGCATCT GCACGCACAT TCTCGCTTTT GAGGGTGAGG CCCATGTGGA GTGGTTCGAA
GGCGATTTCT CGGCCTACGA GGAAGACAAG AAGCGGCGGC TTGGGCCGGA TGCGCTGGAG
CCCAAGCGGT TGAAGCATAA GAAATTTGTG AGGTGA
|
|---|
| Protein sequence | MAAYQYVYHM DGVSKTYPGG KKCFENIRLS FLPGVKIGVV GVNGAGKSTL MKIMAGLDKD
FTGEAWSAEG ARVGYLPQEP QLDETLTVRE NVMLGVAEKK GKLDRFNELA MNYSDETADE
MAALQDDIDA NNLWDLDSQI DVAMEALRCP PDDAPVETLS GGERRRVALC KLLLEAPEML
LLDEPTNHLD AETIAWLQQH LIDYKGTILI VTHDRYFLDD ITGWILELDR GRGIPYEGNY
SAWLEQKAKR LEQEAREDKS RQKTLERELE WIRQGAKARQ AKQKARINAY EDLAGKSERE
KLSRATIIIP NGQRLGGKVI EINNLKKGYG DKLLIEDLTF ALPPGGIVGV IGPNGAGKST
FFRMLTGQEK PDAGTLEYGD TVDLAYVDQS RDALAGDTTV WEEISGGAEI IELGDATMNS
RAYCSAFNFK GGDQQKKVGQ LSGGERNRVH MAKLLKSGGN VLLLDEPTND LDVETLRALE
DALTDFAGCA VVISHDRFFL DRICTHILAF EGEAHVEWFE GDFSAYEEDK KRRLGPDALE
PKRLKHKKFV R
|
|---|
| |