| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3519 |
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| Symbol | |
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| ID | 3935993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3575739 |
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| End bp | 3577184 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637905893 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_511461 |
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| Protein GI | 89056010 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00240194 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACCCA TTACAATTGG CCTCTACGTC ACCGGTGGTT TGCTGCTGTT TGTTATTCTT
GGCATGCGCG TGGCCTTTGC GGCGGGTATG GCAGGCTTGA TCGGGCTCAT CTGGATCTTC
TGGATGCGCC GCGATTATGG CGCGGACGAT CTGGGATGGG CCGTCGGCGT CGCGGTGCAG
ACGGCAGGGC AAGTCCCCCA CGCCAAGGTC GCCAGCCAGG CGTTATCCCT GATCCCAACG
TTCATTCTGA TAGGTTACAT GGCCTATTAT GCAGGGCTGA CGAAGGCACT GTTCGAGGCC
GCCAAGCGCT GGATCGCCTG GGTGCCCGGC GGCCTGGCCG TCTCCACCGT CTTCGCCACC
GCTGGCTTTG CCGCCGTGTC CGGCGCATCG GTCGCGACCT CCGCCGTCTT TGCCCGCATC
GCCATCCCTG AAATGCTCAA GATCGGCTAC GACAAACGCT TTGCCGCAGG CGTTGTGGCG
GCGGGCGGCA CGTTGGCCTC CCTCATCCCG CCCTCGGCCA TCCTGGTGAT CTATGCCATC
ATCGTGGAGC AGGACGTGGG CATGTTGCTG CTGGCGGGCT TCATCCCCGG GGCGTTCTCG
GCCCTCATCT ACGCGCTGAT CATCATTGGC CTTGCGCTGA CGATCAAGAA CTTCGGCCCT
CCGGTCAAAG GCTTCACCTG GGGCCAGCGG TTCAGCGCGT TGTTGCCGGC CCTGCCCATT
GTCGCCGTCG TCGTGATTAT CCTCTTCTTC GTGTACAACC CGATCCCCGC AGAGGCGACG
ATCGCGGGCC GCACCATCAA CATCCCCTTC GGCGGCGACA GCTGGGGCAC ACCGACCGAG
GGCGGGGCCA TCGGTGCCTT CATCGTTTTC CTCATGGCAC TGTTTCGCGG CATGCGCTGG
CCCGAGTTTC GCGACGCGTT GATTGAGACC GCGAAGCTCA GCGTGATGAT CTTCACCATC
ATCTGGGGCG TCCTGATTTA CGTGCGGTTC CTGGGCTTTG CGGAACTTCC CGCCGCCTTC
GCGGATTGGA TCACCAGCCT GACCGTCTCA CCCATGCTGA TCCTGGTCTG CATCCTTCTG
GCCTATGCGG TCCTGGGCAT GTTCATGGAC GCCATCGGGA TGCTTCTGCT GACCCTGCCC
GTCGTCTTCC CCGCCGTCAT GGCACTGAAT GGTGGCATCG ACGTCTCGGC AGCCGACAGC
GCCTTCGGCA TGTCGGGGCC CATGTGTGCA ATTTGGTTCG GGATATTGGT GGTAAAAATG
GCAGAGTTCT GTTTGATCAC ACCGCCCATT GGCCTGAACT GCTTTGTGGT CGCAGGCGTG
CGCGACGATC TGACAGTGCA GGACGTGTTC CGGGGCGTCA CGCCCTTCTT CATTGCCGAC
GCGATCACCA TCGCACTTCT GGTGACCTTC CCGTGGATCG TCCTGTGGCT CCCCAGTCAG
GTGTAA
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| Protein sequence | MEPITIGLYV TGGLLLFVIL GMRVAFAAGM AGLIGLIWIF WMRRDYGADD LGWAVGVAVQ
TAGQVPHAKV ASQALSLIPT FILIGYMAYY AGLTKALFEA AKRWIAWVPG GLAVSTVFAT
AGFAAVSGAS VATSAVFARI AIPEMLKIGY DKRFAAGVVA AGGTLASLIP PSAILVIYAI
IVEQDVGMLL LAGFIPGAFS ALIYALIIIG LALTIKNFGP PVKGFTWGQR FSALLPALPI
VAVVVIILFF VYNPIPAEAT IAGRTINIPF GGDSWGTPTE GGAIGAFIVF LMALFRGMRW
PEFRDALIET AKLSVMIFTI IWGVLIYVRF LGFAELPAAF ADWITSLTVS PMLILVCILL
AYAVLGMFMD AIGMLLLTLP VVFPAVMALN GGIDVSAADS AFGMSGPMCA IWFGILVVKM
AEFCLITPPI GLNCFVVAGV RDDLTVQDVF RGVTPFFIAD AITIALLVTF PWIVLWLPSQ
V
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