Gene Jann_3381 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3381 
Symbol 
ID3935854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3434088 
End bp3435863 
Gene Length1776 bp 
Protein Length591 aa 
Translation table11 
GC content64% 
IMG OID637905754 
ProductTrkA-like 
Protein accessionYP_511323 
Protein GI89055872 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0471] Di- and tricarboxylate transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCCG ATCAAATCAT CCTCTTCTCT CTTTTTGGCG CGGTCTTTGG CCTGCTTCTC 
TGGGGTCGTT TCCGCTATGA TCTTGTGGCG TTCTCTGCCC TCATGGTGGG CACGGTTCTG
GGCGTTGTGC CCACATCGGA CGCCTTCGCG GGCTTCGGCC ACCCCGCCGT TCTGGTGGTG
GCGCTGGTCC TTGTTGTCTC GGCAGGTCTG GTGCGATCCG GCGCGGTGTT CCTGATCACC
CGCACGCTGG TGGACGCGTC ACGGTCCCTC GGCGCGCATA TCACGATCAT GGGGGCCATT
GGCGGCGCTC TCTCGGCATT CATGAACAAC GTGGCCGCGC TGGCGCTGCT GATGCCCGTC
GATATCGCAA CGGCGCGCAA GGCGGGTCGC GCGCCGGGCG TGTCGCTGAT GCCGCTGTCA
TTCTGCACAA TCCTGGGCGG CATGGTCACG CTGATCGGCA CGCCACCCAA TATCATCATC
GCCACGATCC GGGAGGATCA GTTGGGTGAG CCCTTTCGCA TGTTTGATTT TGCCCCCGTC
GGCGGGGTGG CCGCCATTGC GGGTCTGGCT TTCGTCGCGC TGATCGGTTG GCGGCTCATC
CCGGTACGTG ATAGCGGCGT TGGCGGCGAC CAGCTAAAAG CGCTTGCGCC ATATCTCGCA
GAATTGCGCG TGCCTGAAGG CTCCAAACTC GACGGCACCC GCCTGCGCGA TCTGCAAGCG
GGCGCAGAGG AGGCTGACGT CGCCATCCTC GGCATCCTGC GCGACGGCAA ACGCCGCTTT
GGGACAGGCC GCAACCTGAC ATTGCGCGAA GGGGACGTGC TGGTGCTGGA GGCCGCGCCG
GAGGCCTTGG ACGAATTCCG CGTGGGCCAG AATTTGGAGA CGGCCGGCAG CGACACAGCC
ACCGAAAACG CCACCGGCGA CGGCGTCTCT TTCATCGAGA TGGTTGTGCC CGACGATGCC
CGCATCGCAG GCAAGACCGT CGAAAGCGTG GGCCTTGCCT GGCGTCACCG CACCACGTTG
ATGGGGATTG CGCGCAAGGG CACGCGGATC ACCAAGCGGC TGCGCAAGAC CTTGGTGCAG
CCGGGTGATA TCCTGCTGCT GCTGGCCCCC AGCGACAGCG CCGATGATGT CGTCAGCTGG
CTTGGCGGCC TCACGCTTGC GGATCGGGGT CTGACGGTCA CGAACGACAG CAAGACCTGG
GCGGCCATCG GCCTTTTTGC TGCCGCCGTC CTCGCCGCGT CTCTGGGCAT CGTCTACCTG
CCCATCGCGC TTGGCATCGT CGCGGTGGGC TATGTGCTGC TGAAAATCCT GCCCATTGCG
GAGATTTACG ACCACATCGA ATGGCCGGTC GTGGTCCTGC TGGGGTCGAT GATCCCCCTT
GGCGCGGCGC TCGACAGTTC CGGCGGGACC GAGCTGATCG CGAATTCCCT CGTAGCCCTC
ACGGATGGTC TGCCAGCCTG GGCGATCCTG ACCGTGCTGA TGGTCGTCAC CATGACGATG
TCGGATGTCC TCAACAACAC TGCCACGGCC ATTGTTGCGG CACCGGTGGG CATCACCATG
GCGCAGTCCC TGGGTGTGTC GCCGGATCCG TTTCTGATGA CCGTCGCTGT CGCCGCGTCG
GCCGCGTTCC TCACGCCGAT TGGCCACAAG AACAACACGC TGATCCTGGG GCCGGGCGGC
TACGGCTTCG GCGATTACTG GCGCATGGGC CTGCCGTTGG AGGTCATCGT GGTTGCCGTT
TCCATCCCCA CGATCCTGCT GGTCTGGCCC CTTTGA
 
Protein sequence
MTPDQIILFS LFGAVFGLLL WGRFRYDLVA FSALMVGTVL GVVPTSDAFA GFGHPAVLVV 
ALVLVVSAGL VRSGAVFLIT RTLVDASRSL GAHITIMGAI GGALSAFMNN VAALALLMPV
DIATARKAGR APGVSLMPLS FCTILGGMVT LIGTPPNIII ATIREDQLGE PFRMFDFAPV
GGVAAIAGLA FVALIGWRLI PVRDSGVGGD QLKALAPYLA ELRVPEGSKL DGTRLRDLQA
GAEEADVAIL GILRDGKRRF GTGRNLTLRE GDVLVLEAAP EALDEFRVGQ NLETAGSDTA
TENATGDGVS FIEMVVPDDA RIAGKTVESV GLAWRHRTTL MGIARKGTRI TKRLRKTLVQ
PGDILLLLAP SDSADDVVSW LGGLTLADRG LTVTNDSKTW AAIGLFAAAV LAASLGIVYL
PIALGIVAVG YVLLKILPIA EIYDHIEWPV VVLLGSMIPL GAALDSSGGT ELIANSLVAL
TDGLPAWAIL TVLMVVTMTM SDVLNNTATA IVAAPVGITM AQSLGVSPDP FLMTVAVAAS
AAFLTPIGHK NNTLILGPGG YGFGDYWRMG LPLEVIVVAV SIPTILLVWP L