| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3248 |
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| Symbol | |
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| ID | 3935720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3297894 |
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| End bp | 3298889 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637905620 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_511190 |
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| Protein GI | 89055739 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.169072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0957932 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAGAC CCATCAAGAC ACTCACCGCG GGCCTTATGG CATTGGCCAT GACCGCCCCT
CTGGCCCAGG CCCAGGACGT CACGATGAAC GTGGGCTTCG GCGCGCCTGA GGAATCACTT
TATGGCCGCT TCGGCGCGAT TTTTGAACGT CTGGCCGAGG AATATACCGG CGGTTCGGTC
GACGTGCGCC TGCGCTGCTG CAACCAGATT GCGACCGAGG ACGAAGGTTT CCGCGCCATG
CAGCTTGGCA CCGTGGACGG CTTCTTCATC ACCGCCACCA ACGTTTCTCC GCACTGGCCG
TTGATGGATG CGACGGCGCT GCCCTACATC TTCCAGAATG AGGCGCATCT GGCCCGCGTG
GTCGACGGGG AGGTGGGTGA TTTCATCCGC GCGCAGCTTT TGGAAGATAC CGGCGTGCAA
TTGCTGAGCT TTGGCCCGGC GCTCTATCGT GACTTCTACA ATTCGGTCCG GCCGATCAAC
ACGATGGCCG ATATGGAAGG CCTGCGCGTC CGCACGCCTA ACAACGCTGT GATGCTGGCG
ACTTTTGAAG CGTTCGGTGC AAACCCCGTG CCGCTGGCGT GGTCCGAGAC GCCGACGGCG
CTGCAAACCG GCACTGTGGA TGGCGGCGAC AATGGCACAG CATTCATCCG CGACATGTCG
TTCTATGAGT TCATGCCCAA CCTCGTGATC ATGGAGCATT TCGTGTCCAT GGCGCCGTTG
TTTGCCTCGG GCTCGTTCAT GGCGAGCCTG ACCGATGAGC AGCGAGAGCA GATCATGCGC
GCCGCCGTGG ATGCGGGGAA TGAGTTCAGC GCCCAGGTCG CGACCGAGAC CGAAGAGGTC
CGTCAGTGGC TGGTGGAAGA GGGCGGCATG ACCCGCACAG ACCCCGACCG CGCGGATTTC
GTGGCCGCCG CCGTGGAAGT CCAGAATGCC GTCGCCGAAG AGCGTGGCGA AGACTTCGTG
GCGCTGGTTG AGATGATCCA AGCCGCCGCC GAATAA
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| Protein sequence | MGRPIKTLTA GLMALAMTAP LAQAQDVTMN VGFGAPEESL YGRFGAIFER LAEEYTGGSV
DVRLRCCNQI ATEDEGFRAM QLGTVDGFFI TATNVSPHWP LMDATALPYI FQNEAHLARV
VDGEVGDFIR AQLLEDTGVQ LLSFGPALYR DFYNSVRPIN TMADMEGLRV RTPNNAVMLA
TFEAFGANPV PLAWSETPTA LQTGTVDGGD NGTAFIRDMS FYEFMPNLVI MEHFVSMAPL
FASGSFMASL TDEQREQIMR AAVDAGNEFS AQVATETEEV RQWLVEEGGM TRTDPDRADF
VAAAVEVQNA VAEERGEDFV ALVEMIQAAA E
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