| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3170 |
|---|
| Symbol | |
|---|
| ID | 3935641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3209135 |
|---|
| End bp | 3210682 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637905541 |
|---|
| Product | peptidase S1C, Do |
|---|
| Protein accession | YP_511112 |
|---|
| Protein GI | 89055661 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.963921 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGACCC AAACAAGACC CCCACGTCCC CCCCAGTCCA TGTCGCAGTC CCAGCCCAGA
TTGCGGGCCC GTGCGATCGC GATGCCGCAT CAGCGCCGCC TGGACACGCG CCTTGTTCTT
GGCGCTCTCA TGGCCGCCCT CACGGCGCTG GCCCTGGCGA TCAGCTCATT GCCCGCGCGT
GCGCAATCGG GTGCCCTGCC GGGGTTTGCC GATCTGGTTG ATCAGGTGGG CGACGCGGTG
GTCAACATCA CGACGTCGTC GGTCGTTGCT GGCCGTGGCG GTGGCCCCGC GCCGGTCGTG
CCGGAAGGCT CTCCGCTGGA AGATTTCTTC AACGAGTTCC TCGGCCCGGA TGGCGGTGAC
AACGGTCCCT CACCCCGGCG GAGCCAGGCC CTGGGGTCCG GTTTTGTGAT CTCGGAGGAT
GGCTATCTGG TCACCAACAA CCACGTCATT GAGGGCGCGG ATGAGATCAT GATCGAGTTC
CGCAACGGTG TGGAACTGGT GGCCGAACTG ATCGGCACAG ACCCCAATAC CGACATCGCG
CTGCTGCGTG TGCAAAGCGA TGAGCCGCTG CCATATGTCC CCTTCGGCGT CGCGTCGGAC
CACCGCGTCG GCGACTGGGT TATGGTCATG GGCAACCCGC TGGGGCAGGG CTTCTCGGTC
TCCGTCGGTG TGGTGTCCGC ATTCGGCCGC TCCCTGTCCG GCACCTATGA CGACTTCATT
CAGACCGATG CGGCGATCAA TCAGGGTAAT TCCGGCGGCC CGCTGTTCAA TCTTGAAGGG
GAGGTGATCG GGGTGAACAC CGCGATCCTG TCCCCCACGG GCGGCTCCAT CGGTATCGGC
TTCGCAATGT CCTCGGATGT CGTGATCAAC GTGGTCGATC AGCTGCGTGA GTTCGGAGAG
ACTCGGCGCG GCTGGCTTGG CGTTCGCATC CAAGACGTGA CGACGGAGAT GGCCGACGCG
CTGGGGCTTG ATGAGGCCCG TGGCGCGATG GTCACCGACG TGCCCGAGGG CCCCGCGCTT
GAGGGTGGGA TCGAGGTTGG TGATGTGATC CTGACGTTCG ACGGAGCCGA TGTGGAAGAC
ACGCGCGGCC TCGTGCGCGT GGTGGGTGAC AGCACTGTGG GTGAGACCGT CCGCGTGGTG
GTCTTCCGCG ATGGCGCGAC GGAGACGTTG CGCATTACCC TCGGTCGCCG GGAGACGGCG
GAATCGGCCG CCGCCCCTGA GACACCCGAA GGCGCAGAAG CCGCTCCCTC CAGTATTGTG
CTTGGCATGA CGCTGACCCC CCTGACCGAT GAGTTGCGGG GCGAGCTGAA TGCGCGCGGT
GTCACCAATG GTCTGGTGAT CACCGAGATC GACCCGGTCT CCGCTGCTGC TGAAATGGGC
CTCCAGGTGG GTGACATCAT CACCGAAGTG ACCCAGATGC CTGTGACAAC AATCGCTGAT
TTTCAACTGC GGATCGACGC GGCGGATGAG GCGGGGCAGG AAACGATCCT GCTTCTGATC
CGCCGCGACG GCAACCCACG CTTCATGGCC TTGGGCATCA AGGAGTGA
|
|---|
| Protein sequence | MTTQTRPPRP PQSMSQSQPR LRARAIAMPH QRRLDTRLVL GALMAALTAL ALAISSLPAR
AQSGALPGFA DLVDQVGDAV VNITTSSVVA GRGGGPAPVV PEGSPLEDFF NEFLGPDGGD
NGPSPRRSQA LGSGFVISED GYLVTNNHVI EGADEIMIEF RNGVELVAEL IGTDPNTDIA
LLRVQSDEPL PYVPFGVASD HRVGDWVMVM GNPLGQGFSV SVGVVSAFGR SLSGTYDDFI
QTDAAINQGN SGGPLFNLEG EVIGVNTAIL SPTGGSIGIG FAMSSDVVIN VVDQLREFGE
TRRGWLGVRI QDVTTEMADA LGLDEARGAM VTDVPEGPAL EGGIEVGDVI LTFDGADVED
TRGLVRVVGD STVGETVRVV VFRDGATETL RITLGRRETA ESAAAPETPE GAEAAPSSIV
LGMTLTPLTD ELRGELNARG VTNGLVITEI DPVSAAAEMG LQVGDIITEV TQMPVTTIAD
FQLRIDAADE AGQETILLLI RRDGNPRFMA LGIKE
|
|---|
| |