Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3064 |
Symbol | |
ID | 3935535 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 3097423 |
End bp | 3098712 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637905435 |
Product | type III effector Hrp-dependent outers |
Protein accession | YP_511006 |
Protein GI | 89055555 |
COG category | [S] Function unknown |
COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.174455 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGTGC CGCGCCTCGC CTGGTATGGC GACGATTTCA CCGGGTCCGC CGCCGTCATG GACGAGCTGG CGCAGGCCGG GCTGACGGCC GTTCTGTTCA CACGGATGCC CGACGATGCA ACTGCCACCC GCTTTGCGGG ATACGATGCC GTCGGTCTCG CCGGAACCGC GCGGACCCGC GGGCCCGCCT GGATGAGACG GGAATTGCCG GGCGTCTTCG ACTGGATGGA AAGGACCGGC GCTGACCATC TGCACTACAA GATCTGTTCC ACCTTCGACT CGTCAGCCGA GCTTGGGTCG ATCGGCCTTG CTGCCGAGAT CGGTTTGGCG CAGCTCGGCG GATGGGCGCC CTGCCTGACC GCCGCACCGT CCATGGGGCG ATGGCAGTGT TACGGGACGC TGTTCGCCCG CGGACCGGAC GGCGCCGCGC ACCGGCTCGA CCGACACCCG GTGATGCGCC AGCATCCTTC GACGCCCATG GCAGAGGCCG ATCTGGCGCG CCATCTTGCG GAGCAGACTG ACCTACCCAT CGGCTTGCTC ACGCTCGACC AGCTGGCGGG TGGGGTGCCG GAGCGGGATC GTGATGGGAT CGTTTTGCTC GACGCCCAAA GAGAGGCCGA CATGGTGCTG GCAGGCGCGA TCCTAGCGGA TAATGGTGCG GGGTTATTGC TTGGCTCCCA AGGGGTTGAA ATGGCATTGA TCGCCCATTG GCGGGCGGCC GGGCGGCTGG GTTCCGAGCA ACCGCGCACC CCACTTCGAC CGGCGCGTCT GGCGGTGGTT TCGGGCTCTG TCTCAGAGGG AACCGCGGCG CAGATCACAG CGGCGAAGGC GGCCGGTTTT GCAACATTCG CGCTCGACAC CGCGTCGCTG CTCGACGGGG CGGTGCCGGA TTTGACCAAA GCCACCGCTG CCCTGCGCCA GGGGGCGTCA ATCCTGTGCC ACACGGCATT GGGGCCGCAG GACCCCCGCC TGTCCGCGAC ACGCGACCGA CAACGATCGC TTGGCCTTTC ACCGGAAGAC ACGGCGGAGC GGATTGGCAC GGCCCTTGGT CAGGTTTTGG CCCGGCTTGC GCCGACAGCC GAACGACTGG TCGTCGCCGG GGGCGACAGT TCAGGCTTCG TGACCACGGC GCTTGGCGTG GATGCGTTGA CGGCTCTTGC TCCGGTGGAC CCCGGAGCGC CACTGATGCG CGTTCATGGC GGAGCAGCCG ATGGGGCGGA GCTGGTGTTG AAAGGGGGTC AGATGGGCGC GCGCGATCTC TTTGTTCGGC TGCGGAATGG CGACCGCTAG
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Protein sequence | MTVPRLAWYG DDFTGSAAVM DELAQAGLTA VLFTRMPDDA TATRFAGYDA VGLAGTARTR GPAWMRRELP GVFDWMERTG ADHLHYKICS TFDSSAELGS IGLAAEIGLA QLGGWAPCLT AAPSMGRWQC YGTLFARGPD GAAHRLDRHP VMRQHPSTPM AEADLARHLA EQTDLPIGLL TLDQLAGGVP ERDRDGIVLL DAQREADMVL AGAILADNGA GLLLGSQGVE MALIAHWRAA GRLGSEQPRT PLRPARLAVV SGSVSEGTAA QITAAKAAGF ATFALDTASL LDGAVPDLTK ATAALRQGAS ILCHTALGPQ DPRLSATRDR QRSLGLSPED TAERIGTALG QVLARLAPTA ERLVVAGGDS SGFVTTALGV DALTALAPVD PGAPLMRVHG GAADGAELVL KGGQMGARDL FVRLRNGDR
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