Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3030 |
Symbol | |
ID | 3935501 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 3051107 |
End bp | 3052885 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637905401 |
Product | hypothetical protein |
Protein accession | YP_510972 |
Protein GI | 89055521 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.104636 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCAACC GCTTCCTGGA ATTCTACAAT ACTGAACTGG CCGCCCTGCG CCACCGCGCC ACGCGCTTTG CCGAAGCGCA TCCCAAGATC GCCGGGCGGC TGCGTTTGGC CTCCGATGTG GCCGACGACC CGAACGTGGA GCGTCTGATC CAATCCTTCG CCTATACCGC CGCGCGGGTG CATCAGAAGA TCGACGACAG CCTGCCGGAG CTGACCGACG GCCTGCTGGA AACGCTCTAC CCGCACTACC TCGCCCCCCT GCCTTCGCTC ACCATCCTTG GCCTGTCGCC TGATCGCGGC ATGGACGGCG CGCAAACGGT GCCCCGCGGG ACAGAGGTGA CGTCGCAGGT TATCGACGGG GACCGTGTGC GGTTCACGAC GACGCAGGAT GTGCCGCTCT CGCCTGTGAA ACTGACCGAA ATTCGCCTCA GCGCGCGCCC GTTCGAGGCC CCGCCTGCCC CTACTGCGGC CTCTGCCACC TGCCTGCGGC TCAGCCTTGC GCCCACGGGC CGCGTGTCAC TCCGCGACAT GGACCTGAAG CGTCTGCGTC TGTTTCTGTC GGGACCGACG ACCGAAGCGC AGGTCCTCGC CCAACTGATG CTGCAATCGC TGACCGGCGT CACCATGGCC GCCCATGCCG GGGATGAAAA TGCCCGCCGC ATGCCGACCA GCGCCCTGCG GCCCATTGCG TTCGATGACG ACACATCCCT GATCCCCTGG CCTGCGGGCA GCTTCACCGG CTACCGGACC CTGACCGAAT TCGCCGCCCT GCCCGAGAAG TTTCTGTTCT TCGATCTGCA TCTTGACCGG GTGGTGGAAA CGGACCGGCT GGACCTTTAC CTCTACTTCG ACATGCCGCC GGGCGACGTG CTGAAATCCG TGGGCGCGCA TTCCGTGACG CTGCACGCGA CGCCCGCCGT CAACCTCTTC GCCAGTCAGG CCGAACCCAT TGCGCTTGAT GGCACACGCT CGGCCTATCC GCTGGCCGCC GATGCGCGCC GCCCGCGCAC CCGCGCCGTG CATTCGGTGC GCCGGGTCAC TGTCGCGAAC GGGGACGGCA CCTCTGCCAC CAGTGCACCG ATTTTCCACC GGCTGACCGA CCACCAGCGC GGCGGGACCT TCTGGCACCT GCGCCGCCAT TCCGAAGATC AGGGCCACGC CCCGGGGGCC ACATCGCTGG CCTTCGTGGA TGCCCGTAAC CAGCCCGATG CGCCCAACGA CAGCACGGCC AGCATTGACA TCCTGACCAC CAACGCCAAC CTGCCACGCA AGCTGCCCTT TGGTGGCGGT CAACCGGCGC TGTCGCTCGC CTCTCCGATT GACCATGTGT CGGGCGTCAC GTGCCTGCGC GCGCCCACCC CGCCGCGGGC CCCCGGGGCC GATGCCGACC GCGCCTGGCA ATTGATGTCG CATCTGTCGC TCAACCACCT GTCCCTGACC GACAGCGGCG CGCCTGCCCT GCGCGATATC CTGCGCCTGT ATGACCCCGG CGATGGGCCC GAGATGGCGC AGTTGATCGA CGCCATTGAT GACGTGTCCA CCCGGACTGG CCTCGCGCGG ATCGACGGCG TCACCGTGAC CGGCACCGAT ATCACGCTGG CCTTTGATGA CAGCCGCATC GCGCCCGGTC AGGCGGTGGT CTTCGCTTCT GTGCTGGACC GGTTCTTCGG CTGCTACACG ACGCTCAACA CCTTCACACG GCTGTCGGTG CGGATGCGCG ACCGGACCGA TTGGCTGGCC AAGTTTGCTG CGCGCGCGGG GGAGGCGGCG CTGATATGA
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Protein sequence | MTNRFLEFYN TELAALRHRA TRFAEAHPKI AGRLRLASDV ADDPNVERLI QSFAYTAARV HQKIDDSLPE LTDGLLETLY PHYLAPLPSL TILGLSPDRG MDGAQTVPRG TEVTSQVIDG DRVRFTTTQD VPLSPVKLTE IRLSARPFEA PPAPTAASAT CLRLSLAPTG RVSLRDMDLK RLRLFLSGPT TEAQVLAQLM LQSLTGVTMA AHAGDENARR MPTSALRPIA FDDDTSLIPW PAGSFTGYRT LTEFAALPEK FLFFDLHLDR VVETDRLDLY LYFDMPPGDV LKSVGAHSVT LHATPAVNLF ASQAEPIALD GTRSAYPLAA DARRPRTRAV HSVRRVTVAN GDGTSATSAP IFHRLTDHQR GGTFWHLRRH SEDQGHAPGA TSLAFVDARN QPDAPNDSTA SIDILTTNAN LPRKLPFGGG QPALSLASPI DHVSGVTCLR APTPPRAPGA DADRAWQLMS HLSLNHLSLT DSGAPALRDI LRLYDPGDGP EMAQLIDAID DVSTRTGLAR IDGVTVTGTD ITLAFDDSRI APGQAVVFAS VLDRFFGCYT TLNTFTRLSV RMRDRTDWLA KFAARAGEAA LI
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