| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2567 |
|---|
| Symbol | |
|---|
| ID | 3935030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2574727 |
|---|
| End bp | 2576010 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637904931 |
|---|
| Product | TRAP dicarboxylate transporter- DctM subunit |
|---|
| Protein accession | YP_510509 |
|---|
| Protein GI | 89055058 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCACCT ATATCTCTGT CGGCCTCCTT GGCCTGCTGG CCCTGTCGAT CCCGGTTGGT
ATCGTCCTGT TTTTGCTGGG GTTTGGCGTC GACCAGTTCT TCTCCAACTT CCCGCTGTCA
CGCGCTCTGG GCAACATGGT CTGGACCGCA TCGAACTCCG CCACGCTGAT CGCGATCCCG
TTCTTCGTGT TGCTCGGCGA GGTCCTCGTC CGCTCCGGCG TGGCGACCAA AACCTATGCA
GCACTTGACC GCTGGGTCAG CTGGCTGCCG GGCGGGTTGG TCCACGCCAA CGTCGCCACG
GCGACGATGT TTTCGGCCAC CTCCGGGTCC TCCGTTGCGA CTGCTGCGAC CGTGGCCACC
GTCGCCATGC CGCAGGCCGA AAAGCTCGGC TATGACCCGA AACTCTTCTC CGGCGCCATC
GCGGCGGGCG GCACGTTGGG CATCATGATC CCGCCATCGA TCAACCTGAT CGTCTTCGGG
TTCCTCACCC AATCCTCGAT CCCGCAATTG TTCCTCGCGG GCCTGATCCC CGGCATCCTG
CTGGCGTGCG CCTTCATGGC CGTGGCCGCC ATCATCTGCC TGATCCGGCC CGAATTGGGC
GGCACCCGCC GCACGTTTCC GTTCCCGCAA ATGTTGCGCG CGCTGGTGGA TCTGCTGCCG
ATCCTGATCC TGTTCGGGCT GATCGTCGGG TCCATATACG CCGGATGGGC CACCCCGACG
GAGGCCGCCG CCGTGGGGGT CGCAGGCGCG CTGGTCATCG CCACGGCGGC GGGTGGCATG
TCCCTGCCAA TGATGCGCGA CGCGCTTTTG GGCACGATCA AGATCACCTG CATGATCATG
CTGATCATCA TCGGCGCGTC GTTCCTGAAC TTCACGCTGG CCTCTGCCGG ATTGGGCCGC
GAATTGACCG ACTTCATGGA AGGTCTGGGC CTTGGGCCGT TCGGCTTCAT CATGGCGGTC
GTGGTGCTTT ACATCGTGCT GGGGTTCTTC ATTGAAACCC TGTCGCTGAT GGTGGTGACG
ATCCCGATCA TCGTGCCGAT GGTGCTGGCG CAGGGCTATG ACGCGATCTG GTTCGGCATC
CTGATGATCG TGCTGATCGA GATGGCGCTG ATCACGCCGC CGGTCGGGCT GAACCTCTAT
GTGGTGCAGG GGGCGCGGAA ATCGGGGTCG CTCAACGAGG TGATGCTGGG GGCGATCCCC
TTTGCGCTGG TGATGCTGGC CATGGCGTTC GCGCTGATCG CCTTCCCCGG GCTGGCGCTG
TGGTTGCCGG GCGTCCTGCA ATAG
|
|---|
| Protein sequence | MVTYISVGLL GLLALSIPVG IVLFLLGFGV DQFFSNFPLS RALGNMVWTA SNSATLIAIP
FFVLLGEVLV RSGVATKTYA ALDRWVSWLP GGLVHANVAT ATMFSATSGS SVATAATVAT
VAMPQAEKLG YDPKLFSGAI AAGGTLGIMI PPSINLIVFG FLTQSSIPQL FLAGLIPGIL
LACAFMAVAA IICLIRPELG GTRRTFPFPQ MLRALVDLLP ILILFGLIVG SIYAGWATPT
EAAAVGVAGA LVIATAAGGM SLPMMRDALL GTIKITCMIM LIIIGASFLN FTLASAGLGR
ELTDFMEGLG LGPFGFIMAV VVLYIVLGFF IETLSLMVVT IPIIVPMVLA QGYDAIWFGI
LMIVLIEMAL ITPPVGLNLY VVQGARKSGS LNEVMLGAIP FALVMLAMAF ALIAFPGLAL
WLPGVLQ
|
|---|
| |