| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2322 |
|---|
| Symbol | |
|---|
| ID | 3934778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2325459 |
|---|
| End bp | 2328920 |
|---|
| Gene Length | 3462 bp |
|---|
| Protein Length | 1153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637904680 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_510264 |
|---|
| Protein GI | 89054813 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.831848 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATC CAACACACAT ATTGGCAGGC GGCGCGCCCG AGGGGTTTGA CGCAACCCTT
GTCCTGAAAG AGGCCGCGAC CGGCCCGGTT CTGCATGTCG CGCGCGATGA CAAGCGCCTG
CGCGCCATGG CCACGGCGCT GGCGTTCTTT GACCCTTCCG TGCCGGTTCT GGAATTCCCC
GGCTGGGATT GCCTGCCCTA TGACCGCGTG TCCCCCCAGG CTGAAATCTC CGCCGCTCGC
ATGGCAACGC TTGCGGCTTT GGCGGCTGGA TTGCAGGGAT CGTTCATCGT CCTGACCACG
TTGAACGCCG CCACCCAATA CGTGCCGCCG CGCGATCTGC TGGCGTCGTC GGCCTTTGTG
GCCAGCGTTG GGGGCCGCGT GGATGAGGAC GCGTTGCGCG CCTTCCTCGT GCGGATGGGC
TACGTGCAAT CGCCCACGGT GTCCGAGCCC GGCGATTATG CCGTGCGCGG TGGCATCATC
GACGTCTGGC CGCCGGGGGA GGAACAGCCG GTGCGGCTGG ACCTGTTCGG CGATACCCTC
GACGGCGCGC GCCGCTTCGA TGTCGTCACC CAGCGCACCA CCGAAAAGCT GCAGCGGGTG
GAGCTTGCAC CGGTATCCGA GGTGATCCTT GACGAGGCCG CCATCGCGCG GTTCCGGCAG
AATTACCGGG TGGAGTTTGG CGCGGGCGGG TCCGAGGATC CGCTCTATGA AGCCGTCACT
GCAGGTCGCA AGGCGCAGGG GATGGAGCAT TGGCTGCCCT TCTACCACGC GCGGTTGGAG
ACGCTCTTTG ACTACCTCCC CGGGGCCACG ATCACGCTGG ACGACCAGTC CACACCGCAG
CGCCTCGCGC GGTGGGACAG CATCACCGAC CAATACGACA CCCGCAAGAC CGCGCTGACC
CAGAAGGGGC GGCTCGATAC CGTCTACAAA CCCGCGCCGC CGGGGTTGCT CTATCTGGAC
GATGCGGCCT GGGGACGGGC GGTGGACGGC CACCGCGTGG TGCAGTTTTC CTCGAATACG
GCAGCCCCCG GTCCCGGCAT CATCGACGCA GGCGGCCGCA TCGGGCGCAA CTTCGCGCCT
GAGCGCCAGC AGGAAAGTAT CAGCCTTTTT AGTGCTTTGT CGGATCATAT TAAAGTGATG
CGTGAAGATG CAGCCGTCGT TGTCGCGTCC TGGTCCGACG GCGCGCGGGA GCGTCTGGAA
GGGTTGTTGG AGGACGAAGG GCTCAGCGAC GTGAAGCGCA TCGATATTGC GCACGGCATC
GGCGGGGCTG GCACAATCAA TCTGACGATT TGGCCATTAG AACAAGGGTT TACGGGTCTG
CTCAAGCTTG AGCAGGTCAG TTCGGGCAAG ATTTGCGTGA TTTCCGAGCA AGACGTCCTC
GGGGATCGCC TGATCCGCCC CAAACGCAAG GTCAAGCGCG CCGATAATTA CCTGACCGAG
GCGCAAAGCC TCAGCCCCGG CGATCTGATC GTCCATGTCG ACCACGGCGT GGGCCGCTAC
AAAGGGCTGG AGACGGTCAC GGCGGCGGGT GCCCCCCACG AATGCATTGC GCTGGAATAC
GCTGGCGGCG ACCGCCTGTT CTTACCGGTT GAAAACATCG AACTGCTCAG CCGATACGGC
CACGACGACG GCCTGCTGGA CAAGCTCGGT GGCGGCGCGT GGCAGGCCAA AAAGGCCCGC
CTGAAGGAGC GTATTCGCCT GATCGCGGAC AAGCTGATCC GCATCGCCGC CGAACGCGAG
CTCCGCAAAG CGCCCATATT CGAGCCCCCC GGCGACATGT GGGAGGCGTT CAACGCCCGC
TTCCCCTATG AGGAAACCGA TGACCAGCTG ACCGCCATCG CCGACGTACT GGACGACATG
ACGCTTGGCC GCCCGATGGA CCGCCTCGTC GTCGGCGACG TGGGCTTCGG CAAGACCGAG
GTTGCCATGC GCGCGGCCTT TGTCGCCGCC GCCTCCGGCA TGCAGGTGGC CGTCGTCGCC
CCCACGACGC TGCTGGCCCG CCAACACGCG AAGACCTTCC AGGACCGCTT CCGGGGCTTC
CCCATCACCG TGCGGCAACT CAGCCGCTTC GTGGGCACGA AGGAGGCGGA GCAGACCCGC
AAAGGCCTGT CGGACGGGTC GGTCGATATC GTTATCGGCA CCCATGCCAT CCTGGCGAAA
TCCGTGCGGA TCCAGAACCT CGGCCTGATG ATCATTGACG AGGAACAACG TTTCGGCGTC
ACCCACAAGG AACGCCTGAA AGAGATGCGC TCCGACGTCC ACGTCCTGAC CCTCTCGGCC
ACACCGATCC CGCGCACGTT GCAGATGTCG CTGTCGGGCG TGCGGGACCT GTCGATGATC
GGCACGCCCC CGGTCGACCG CCTCGCCATC CGCACCTATG TCTCCGAGTT CGATACCGTC
ACGATCCGCG AGGCGCTTTT GCGCGAACAT TATCGCGGCG GGCAGACCTT CTATGTCGTC
CCCCGCATCC AGGATCTACC CGAGATTGAA GAATTCCTCA AAGATCACGT CCCCGAAGTC
ACCTATATCA CCGCCCATGG CCAGATGGCG GCAGGGGAAC TCGATGACCG CATGGTTGCC
TTCTACGACG GCAAATACGA CGTGCTCCTG GCCACGACGA TTGTCGAATC CGGCATCGAT
ATCCCGACCG CCAACACCAT GGTCATCCAC CGCGCGGATA TGTTCGGGCT GGCGCAGCTC
TACCAGATCC GGGGCCGGGT GGGGCGTGCA AAAACACGGG CCTATGCCTA CCTCACCACA
AAGCCGCGCG GAAAGCTGAC GCCGTCAGCC GAGAAGCGGC TGCGGGTTCT GGGCAGCCTC
GACAGCCTCG GCGCGGGCTT CACGATTGCC TCCCAGGACC TCGATATTCG GGGCGCGGGC
AACATCGTGG GCGAGGAGCA ATCGGGCCAC GTCAAAGAGG TGGGCTTTGA GCTGTACCAA
TCCATGCTGG AAGAAGCGAT TGCCAAGATC CGCTCGGGCG AGGGCGAAGG CCTGCTTGGC
GACGGCGATG GCCAGTGGTC GCCCACCATC AACCTCGGCG TGCCGGTCCT GATCCCGGAG
GCTTACGTGC CCGACCTCGA CGTGCGTCTT GGCCTCTACC GCCGCCTGTC ACAGCTGGAA
ACCAAGGTCG ATCTGGAAGG CTTCGCCGCG GAGTTGATCG ACCGCTTCGG CAAGCTGCCC
AAGGAGGTGA ACACGCTCCT GTTGGTCGTG CGCATCAAGG CGATGTGCAA ACGCGCCCAT
ATCGCAAAGC TGGACGCGGG CCCAAAGGGT GTGACGATCC AATTCCACAA CGACAAATTC
CCCAATCCCG GCGGGCTGGT GCAGTTTGTG CAGGAGCAAA ACGGCAAAGC CCGCGTCAAG
GACAACAAGA TCGTCGTCAT GGCCGATTGG CCCAAGGACG CCGATAAAAT CAAGGGCGCT
TTCGCCGTCG CCCGTGATCT GGCGGTCTTC GCCAAGGGCT AA
|
|---|
| Protein sequence | MADPTHILAG GAPEGFDATL VLKEAATGPV LHVARDDKRL RAMATALAFF DPSVPVLEFP
GWDCLPYDRV SPQAEISAAR MATLAALAAG LQGSFIVLTT LNAATQYVPP RDLLASSAFV
ASVGGRVDED ALRAFLVRMG YVQSPTVSEP GDYAVRGGII DVWPPGEEQP VRLDLFGDTL
DGARRFDVVT QRTTEKLQRV ELAPVSEVIL DEAAIARFRQ NYRVEFGAGG SEDPLYEAVT
AGRKAQGMEH WLPFYHARLE TLFDYLPGAT ITLDDQSTPQ RLARWDSITD QYDTRKTALT
QKGRLDTVYK PAPPGLLYLD DAAWGRAVDG HRVVQFSSNT AAPGPGIIDA GGRIGRNFAP
ERQQESISLF SALSDHIKVM REDAAVVVAS WSDGARERLE GLLEDEGLSD VKRIDIAHGI
GGAGTINLTI WPLEQGFTGL LKLEQVSSGK ICVISEQDVL GDRLIRPKRK VKRADNYLTE
AQSLSPGDLI VHVDHGVGRY KGLETVTAAG APHECIALEY AGGDRLFLPV ENIELLSRYG
HDDGLLDKLG GGAWQAKKAR LKERIRLIAD KLIRIAAERE LRKAPIFEPP GDMWEAFNAR
FPYEETDDQL TAIADVLDDM TLGRPMDRLV VGDVGFGKTE VAMRAAFVAA ASGMQVAVVA
PTTLLARQHA KTFQDRFRGF PITVRQLSRF VGTKEAEQTR KGLSDGSVDI VIGTHAILAK
SVRIQNLGLM IIDEEQRFGV THKERLKEMR SDVHVLTLSA TPIPRTLQMS LSGVRDLSMI
GTPPVDRLAI RTYVSEFDTV TIREALLREH YRGGQTFYVV PRIQDLPEIE EFLKDHVPEV
TYITAHGQMA AGELDDRMVA FYDGKYDVLL ATTIVESGID IPTANTMVIH RADMFGLAQL
YQIRGRVGRA KTRAYAYLTT KPRGKLTPSA EKRLRVLGSL DSLGAGFTIA SQDLDIRGAG
NIVGEEQSGH VKEVGFELYQ SMLEEAIAKI RSGEGEGLLG DGDGQWSPTI NLGVPVLIPE
AYVPDLDVRL GLYRRLSQLE TKVDLEGFAA ELIDRFGKLP KEVNTLLLVV RIKAMCKRAH
IAKLDAGPKG VTIQFHNDKF PNPGGLVQFV QEQNGKARVK DNKIVVMADW PKDADKIKGA
FAVARDLAVF AKG
|
|---|
| |