| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2236 |
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| Symbol | |
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| ID | 3934690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 2240715 |
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| End bp | 2241758 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637904593 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_510178 |
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| Protein GI | 89054727 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.64486 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTTCCC CGATGTCCCG CAGTATCCAC CAAGAGACCG CCCAAGGATT AAGCGTTTTG
CCCGTAACCC TCGCCGACAT CGCACTAGAC CCCCCTGTCC TGCTCGCACC GATGGCGGGG
ATCACGGATC TGCCGTTTCG CAGGCTGGTG GCCAGCTTTG GCGCCGGGCT TGTGGTGAGC
GAGATGGTGG CGTCGCAGGA AATGGTGGAA GCGAAGGCCT CCGTCCGGGC GCGGGCCGAG
CTTGGGTTCG GTGAGAACGC CACCGCCGTG CAACTGGCAG GCCGTGAGGC CCATTGGATG
GCGGAGGCCG CCCGGATCGC CGAGGGGCAG GGCGCGCGGA TCATCGATAT CAACATGGGT
TGCCCGGCCA AGAAGGTCGT TGGCGGGCTG TCAGGCTCTG CGCTGATGCG CGACCTCGAC
CATGCCTTAC GCCTGATTGA CGCCGTGGTG GGCGCCGTGA ATGTGCCCGT CACGCTAAAG
ACGCGGCTGG GGTGGGATGA TAAGACGCTG AATGCGCCTG CTCTCGCCCA GAGGGCAGAA
ACCGCTGGTA TCCGGATGAT TACCATCCAT GGCCGCACCC GGTGCCAGTT CTACAAGGGC
ACCGCAAAGT GGGGCGCGAT CCGTGCCGTG AAAGACGCCG TGTCGATCCC CGTCATCGCC
AATGGCGACA TCACCGATGC GCCTGCCGCC GCGCAAGCCC TGCGCTGTTC CGGGGCCGAT
GGCGTCATGG TGGGACGTGG CATTCAGGGG CAGCCCTGGC TGGTGGCGGA GATCGGCGCG
GCTTTGTTCG GCACACCGAC GCCCGTCGCG CCCCAAGGCG ATGCACTGGT CGCGATGGTC
GCGGCGCATT ACGAAGACAT GCTGGCGTTT TATGGCCGTG ACTTGGGCGG CAAAGTCGCG
CGCAAGCATT TGGGATGGTA CATGGACGGC GCGGGAACCC CGCCCGCATT GCGCAAAGAG
GTATTGACCA CCAAAGATCC CGGTGCCGTG TTGAAGGCCC TGCCGCTGGC CCTCGCACAA
ACGTCCCAAA GGGCCGCCGC ATGA
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| Protein sequence | MSSPMSRSIH QETAQGLSVL PVTLADIALD PPVLLAPMAG ITDLPFRRLV ASFGAGLVVS
EMVASQEMVE AKASVRARAE LGFGENATAV QLAGREAHWM AEAARIAEGQ GARIIDINMG
CPAKKVVGGL SGSALMRDLD HALRLIDAVV GAVNVPVTLK TRLGWDDKTL NAPALAQRAE
TAGIRMITIH GRTRCQFYKG TAKWGAIRAV KDAVSIPVIA NGDITDAPAA AQALRCSGAD
GVMVGRGIQG QPWLVAEIGA ALFGTPTPVA PQGDALVAMV AAHYEDMLAF YGRDLGGKVA
RKHLGWYMDG AGTPPALRKE VLTTKDPGAV LKALPLALAQ TSQRAAA
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