| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2054 |
|---|
| Symbol | |
|---|
| ID | 3934507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2059214 |
|---|
| End bp | 2060224 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637904410 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_509996 |
|---|
| Protein GI | 89054545 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000423079 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.894594 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGCA TACCGCTGTC ATACCTGGGC AACCGCCTGT TCACGTTCGT TCTGACCGTG
TTCATCGCGG CCACGCTGAT CTGGATCATC CCGCGCCTGT CGCCCGTGGA CCCTGTGGAT
GTCATGCTCG GACGCATGGC GGCGGGGGGC GGTTCGGTGG AGAACTCCTC CGCGATCCTC
GATCAACTCC GCTCCAGCTT CGGGCTCGAT CAGCCGCTGA TCGTGCAGTA CCTGCTGTAT
ATCAAGAACA CGCTGACCTT CGATTTTGGC CTCTCGACGG CGTCCTTCCC CACGCCTGTG
TCGTCAATGA TCGCCAACGC GCTGCCGTGG ACGCTTGGCC TGATGGTCAT CTCGCTCATC
ATCACCTTCG TTGTCGGCAA CCTTCTGGGG GCCTTGATGG TGTGGGAAGA AAGCCCGAAC
CTTGTGAAAG TCGCGATCCC GGCGGCCATG GTCTTCACCT CGATCCCGCC GATCCTGTCG
GGGCTTTTGC TGATGTATGT CTTCTCCACC CAACTGCGGT GGTTCCCGTT GAATGGCGCC
TACGGTCTGA ATGTAGAGCC CGGCTGGAGC ATGGATTTCG CGCTGTCGGT CGCCTATCAC
GGGTTCCTGC CTGCGCTGTC CATCGTGGTC GTCACCTTCG GGTTCTGGGC GCTTGGGATG
CGCGGTCTGA TGATCACCGT GCAGGGCGAG GACTATACAA CGCTGGCCAA GGCCAAGGGC
CTGAAACCGC GCTATATCCT GTACCGTTAC ATGATCCGCA ACGCGATCCT GCCGCAGATC
ACGGCGTTTG CGCTCAAGAT CGGGATGTTG GTCGCGGGGC AGGTGCTGGT GGAGCGCATC
TTCGCCTATA ACGGCATGGG CAAGCTGCTT TATGATGCGA TCCTTGATCA GGACTTTCCG
GTGATCCAGG GGGTCAGTTT CGTGATCATC CTGATGACCG CGCTGGCCGT TTTCTTCGTT
GATCTGATCT ATCCGCTGAT CGATCCCCGT ATTCGTCATG AGGGGACCTG A
|
|---|
| Protein sequence | MGRIPLSYLG NRLFTFVLTV FIAATLIWII PRLSPVDPVD VMLGRMAAGG GSVENSSAIL
DQLRSSFGLD QPLIVQYLLY IKNTLTFDFG LSTASFPTPV SSMIANALPW TLGLMVISLI
ITFVVGNLLG ALMVWEESPN LVKVAIPAAM VFTSIPPILS GLLLMYVFST QLRWFPLNGA
YGLNVEPGWS MDFALSVAYH GFLPALSIVV VTFGFWALGM RGLMITVQGE DYTTLAKAKG
LKPRYILYRY MIRNAILPQI TAFALKIGML VAGQVLVERI FAYNGMGKLL YDAILDQDFP
VIQGVSFVII LMTALAVFFV DLIYPLIDPR IRHEGT
|
|---|
| |