| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2014 |
|---|
| Symbol | |
|---|
| ID | 3934467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2020086 |
|---|
| End bp | 2020805 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637904370 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_509956 |
|---|
| Protein GI | 89054505 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.193015 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACG CCATACTGCT GGTCGAAGAT GACACACGCC TCGCCGAGAT GGTCGCAAGC
TATCTCGGCG GGAACGGTTT TGATGTGTCC CGTGTGGATA CCGGCGAAAA GGCATTGGGC
CTTCAGGGGC GCCAGAGTTT CGAGGCGATG ATACTGGATC TCAATCTGCC GGGTATCGAC
GGCCTGGAAG TCTGTCGCCA TGTCAAAGCC CAAAGCGCGC TGCCGATCAT AATGCTCACG
GCCAAAGGCG ACCCGATGGA CCGGATCATC GGGTTGGAAA TCGGGGCCGA TGACTATCTG
CCGAAGCCTT TCGAGCCGCG CGAACTGCTG GCGCGTTTGC GGGCCGTCAT GCGTCGCGGC
CAAACGTCCC CGCATGCAGG TTCAACTCCC CTCCAGTTTG GCCGATTACA GATCGACCCG
GGCGCCATGG TTGCGCGTGT GGATGGTCGA CCCTGCGATC TGACCACCCA TCAATTTCAA
ATCCTGCTGG TGCTGGCCCG GGCGGCGGGT CGCGTCCTGA GCCGTGATGC GTTGATGGAC
GCATTGAGAG GGGAAGCGCT TGAGGCCTTC GATCGTTCCA TTGATGTACA TGTTTCCCGC
ATCCGGGCGG AGATCGAGGA CGACCCCAAA CACCCACGGC GGATCATCAC GGTCCGCGGC
GCGGGCTATG TTTTTGCCCG TATTCACGAT GGCGATAAAC ACGTCAGGGA CCGCGTATGA
|
|---|
| Protein sequence | MTDAILLVED DTRLAEMVAS YLGGNGFDVS RVDTGEKALG LQGRQSFEAM ILDLNLPGID
GLEVCRHVKA QSALPIIMLT AKGDPMDRII GLEIGADDYL PKPFEPRELL ARLRAVMRRG
QTSPHAGSTP LQFGRLQIDP GAMVARVDGR PCDLTTHQFQ ILLVLARAAG RVLSRDALMD
ALRGEALEAF DRSIDVHVSR IRAEIEDDPK HPRRIITVRG AGYVFARIHD GDKHVRDRV
|
|---|
| |