| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0997 |
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| Symbol | |
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| ID | 3933441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 955609 |
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| End bp | 957009 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637903345 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_508939 |
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| Protein GI | 89053488 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0263659 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.897862 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATGA CTAATATTTT GCGCGCGTGC CTTCTGGGCG CAGCCGCACT TCTTTTCCAA
CCCATCTCCG GCGCACAGGC GCAAGGACTT CGCGTGGTCG AGGGCGAAAG CACCGGCACC
CTGCGCGTGC CGATGAACCG CGCCGTCGTG GTGGAGGCCG AAATGCTCTT TGCAGAGCTC
TCCGTGGCCA ACCCCGCAAT CGCAGACATC GCGACATTGT CGGAGCGATC CATCTACGTT
CTGGGCCGCG CGCCCGGGCG CACAACGATG ACGCTTTTGG GGGCCGACGG ATCCCTCATC
GCCAATGTCG AAATTCAGGT CGTCCCCGAC GTGGCCGAGC TGCGTGAACG TCTGCGCGAA
ATCATCCCCG GCGAGCCGGT GGAGGTTCGC ACCGCCAACG ACGGCATCGT TCTGTCGGGC
ACCGTCGGTT CTGCATTTGC AGTCGACCGC GCGATGGAAC TGGCCGAGCG GTACGCGCCA
GGCCGTATTT CCAACCTCAT GATGGTCGGT GGCCAGCAAC AGGTCATGTT GCAGGTTCGG
TTTGCGGAAA TGCAGCGCAC CGTGCGTCAG GAACTCTCCG CCTCCCTTGG GATTGGCTCG
ACGGGTGGCA ATTTCGGTAC CAGCGTTGGT GCCGGTAACC TGCAGGGCGG CACTGGCTTT
GGCACCGGCA ACCTTCCCGG AGGCCTTGAC GGCCGCAACG GCGGAATTGG GGTTAGTTTT
GCGGCGGGCG GTCTTCAACT GTCGGTTCTT TTGGAAGCGC TGGAATCCAA CGGCATGGTG
CGTACCCTGG CCGAGCCCAA TCTGACGGCT CTCTCGGGTG CCACGGCCTC CTTCCTGGCT
GGCGGGCAAT TCCCCGTCCC CACTGAATCT GAAAGTGGTG GCACAACGAT CGAATTCGTC
GACTTTGGTG TGCAGCTCGA TTTCACCCCA ACAGTCGTTG GCGATCACGT CATCAATCTG
GCACTGGACG CCGAGATCTC CTCGATCGGG GAAATCATTG CGACCACCGG CGCACCGGCC
ATCAACACGC GCAACGCCTC CACCGTGGTC GAGATGCGCG ACGGCGACAG CTTCGCAATT
GCGGGTCTGT TGCAGGATGA CTTCACCAAC TCCGTGGCGG AAGTGCCCTG GCTTGGGGAT
TTGCCGGTTC TTGGCGCGCT CTTCCGCTCC GCCTCCTACA GCCGGTCTCA GTCTGAACTT
GTGATCATCA TCACCGCGCA TCTGGTCAGC CCGGTTAACG GCGAGGCCCT GGCATTGCCC
ACGGACCGCG TCCGCATTCC GACCGAAAGC GAATTGTTCT TCCAGGGACA GGTGACTGGC
AGCTCGCCGC GCCCCGGCAC GGCCGCAGGC GATGTGGCGC AACAGGATTT CTCCGGCTCC
TATGGCTATG TGCTGGATTG A
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| Protein sequence | MSMTNILRAC LLGAAALLFQ PISGAQAQGL RVVEGESTGT LRVPMNRAVV VEAEMLFAEL
SVANPAIADI ATLSERSIYV LGRAPGRTTM TLLGADGSLI ANVEIQVVPD VAELRERLRE
IIPGEPVEVR TANDGIVLSG TVGSAFAVDR AMELAERYAP GRISNLMMVG GQQQVMLQVR
FAEMQRTVRQ ELSASLGIGS TGGNFGTSVG AGNLQGGTGF GTGNLPGGLD GRNGGIGVSF
AAGGLQLSVL LEALESNGMV RTLAEPNLTA LSGATASFLA GGQFPVPTES ESGGTTIEFV
DFGVQLDFTP TVVGDHVINL ALDAEISSIG EIIATTGAPA INTRNASTVV EMRDGDSFAI
AGLLQDDFTN SVAEVPWLGD LPVLGALFRS ASYSRSQSEL VIIITAHLVS PVNGEALALP
TDRVRIPTES ELFFQGQVTG SSPRPGTAAG DVAQQDFSGS YGYVLD
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