| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0994 |
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| Symbol | |
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| ID | 3933438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 951882 |
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| End bp | 953372 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637903342 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_508936 |
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| Protein GI | 89053485 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.010804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.584702 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCCA AATACAAAAA GGCTCCAAAG GGTGGCGAGG TCGCGCATAT TACCGACGTG
GCAGCCGCGC CAAAGACCGA CGACGCGCCC GCACCAGAGA ATTCATCAGC CAAAGCGCAG
ACCCCCGCGC CGAAAGTCGC GCGCAAACCG GGGGGATCTG CCGCCGCCAA GCCGGCCACG
CCCGAAGCCG CGGGGGCTGA GGACAAGGAC CGCAAGCGCC GTCTGCGCCT GGATGAAATC
AAGACAGAGA TGCATCACCG GCTGCTCGAC AACCTCAACC TCTCCGCGCT GGAGACGGCC
AAGGAATCGG AACTTCGGTC TGAAATCACG TCGATCACGT CTGAGCAGCT TGGGGAGATG
GGCGTCGTCC TGAACCGGGA GGATCGCCAG ACCCTCAACA TTGAGCTTTT CGATGAAGTC
ACCGGTCTTG GTCCGTTGGA GCCTTTGCTG AAAGACGACG GCGTCAACGA TATTCTCGTC
AACGGTCCCA ACCGGGTGTT CATTGAACGT GCCGGCAAGC TTCAACTCTC GGACGTGCGC
TTCAAGGACG AGCGTCACCT ACTTCGGATC ATCGACAAGA TCGTGTCCGC CGTCGGCCGG
CGGGTCGACG AAAGCAATCC TTACGTGGAC GCACGCCTGA AAGACGGCTC ACGTTTCAAC
GCGATGGTGC CACCGGTGGC CGTCGATGGC TCGCTCGTCT CCATTCGTAA GTTCAAGAAA
GAAAAGCTGG GGGTCGACGA TCTGGTTAAG TTCGGCGCCT TTTCCGAGGA GATGGCCGCC
TACATTCAGG CTGCCGTGGC CTGTCGCCTG AACGTCATCG TCTCTGGCGG TACGGGCTCG
GGCAAAACCA CAACGCTTAA CGCGCTATCG TCGTTCATCG ACAATTCCGA ACGGATCCTG
ACGATTGAGG ATACGGCGGA ACTTCAACTC CAGCAGGTTC ACGTGGGCCG GATGGAAAGC
CGCCCACCGA ACGTGGAGGG CAAAGGCGCC GTGACCCAGC GGGACTGTCT CCGCAACGCC
CTGCGGATGC GCCCCGACCG TATCATTGTG GGTGAGACAC GCGGCGAAGA GGTCATCGAT
ATGCTCCAGG CCATGAATAC CGGCCACGAC GGATCCATGA CGACGATCCA CGCCAACAAC
GCCCGCGACG CCTGCTCACG CCTTGAAAAC ATGGTCGCTA TGGCAGGGAT CGAGATGCCG
CTGAAGGCTG TTCGCGCCCA GATCTCCAGC GCTGTGCACC TGATCGTGCA GGCCTCTCGT
CTGCAGGACG GCTCGCGTCG CATGGTCTCC ATCACCGAAG TGACGGGGAT GGAGGGCGAA
GTGATCTCCA TGCAGGAGGT GTTCCGCTTC CAGCGCACCG GGCTCCAGCC CGACGGCAAG
ATCCTCGGCC ATTTCACCGC CTGCGGCGTG CGGTCCTATT ATTCCGAGCG GTTCCGGCAG
TGGGGCTATG ACCTGCCCGC GTCGATCTAT GAACCCATGG CAGCCCAGTA A
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| Protein sequence | MFSKYKKAPK GGEVAHITDV AAAPKTDDAP APENSSAKAQ TPAPKVARKP GGSAAAKPAT
PEAAGAEDKD RKRRLRLDEI KTEMHHRLLD NLNLSALETA KESELRSEIT SITSEQLGEM
GVVLNREDRQ TLNIELFDEV TGLGPLEPLL KDDGVNDILV NGPNRVFIER AGKLQLSDVR
FKDERHLLRI IDKIVSAVGR RVDESNPYVD ARLKDGSRFN AMVPPVAVDG SLVSIRKFKK
EKLGVDDLVK FGAFSEEMAA YIQAAVACRL NVIVSGGTGS GKTTTLNALS SFIDNSERIL
TIEDTAELQL QQVHVGRMES RPPNVEGKGA VTQRDCLRNA LRMRPDRIIV GETRGEEVID
MLQAMNTGHD GSMTTIHANN ARDACSRLEN MVAMAGIEMP LKAVRAQISS AVHLIVQASR
LQDGSRRMVS ITEVTGMEGE VISMQEVFRF QRTGLQPDGK ILGHFTACGV RSYYSERFRQ
WGYDLPASIY EPMAAQ
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