| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0911 |
|---|
| Symbol | |
|---|
| ID | 3933355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 866362 |
|---|
| End bp | 867159 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637903259 |
|---|
| Product | amino acid ABC transporter permease |
|---|
| Protein accession | YP_508853 |
|---|
| Protein GI | 89053402 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.312712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTCCC GCTCCCCCCA GGACCAGGAT TTCCCGTGGT GGCTTGTCGC TTTGGGCGTG
TTTGCGGCCT ATGCTTTGTG GCAGCTTTGG ACCAGTGAGA TCTACTGGCA GGTGCTGACA
ACGCTTCGGC GCGGCGTGTG GATCACCGTG ATCGTGACGC TTGTTGGCTT CGCCATGGCG
AGCCTGATGG GCCTGGGCCT CGCGTTGATG AGCCTGTCAC GCCGCCTGAT CCCGCGCCAG
ATCGCGCGCT TTTATATCGA GGTTGTGCGC GGTGTGCCGA TCATCGTCCT GCTTCTCTAC
ATCGCCTTCG TTTTCGCGCC CGGCTTGGTG GCCGCGTATA ATTGGGTGGC GGAGGCGCTG
GGGATGGAGG GTGTCCGCAC CCGCGATTTC CCACTGCTTT GGCGGGCTGT GATCGCGCTC
GCCATCGGCT ATTCCGCCTT CATCGCCGAG GTGTTTCGCG CGGGGCTGCA ATCGGTCGAT
CCGGGGCAGA TCGAGGCCGC GAATGCGCTG GGTCTGAACC GATGGAACAG GTTTCGCCAC
ATCATCTTTC CCCAGGCGAT CCGCACGATC CTGCCGCCGT TGGGTAATGA TTTCGTGGCG
ATGGTGAAGG ACAGCTCCCT CGTGTCGGTC CTTGGAGTGT TGGATGTGAC GCAGTTGGGC
AAGGTTACGG CGGCGTCGAA TTTCCGGTAC TTCGAGACGT ATAATGTGGT GGCGCTGATC
TATCTGACGA TCACGGTGAC CTTGTCCATC CTGTTGCGGC GGATGGAAAA ACGGATGCGG
CAGGGTGAGC GGCGGTAA
|
|---|
| Protein sequence | MLSRSPQDQD FPWWLVALGV FAAYALWQLW TSEIYWQVLT TLRRGVWITV IVTLVGFAMA
SLMGLGLALM SLSRRLIPRQ IARFYIEVVR GVPIIVLLLY IAFVFAPGLV AAYNWVAEAL
GMEGVRTRDF PLLWRAVIAL AIGYSAFIAE VFRAGLQSVD PGQIEAANAL GLNRWNRFRH
IIFPQAIRTI LPPLGNDFVA MVKDSSLVSV LGVLDVTQLG KVTAASNFRY FETYNVVALI
YLTITVTLSI LLRRMEKRMR QGERR
|
|---|
| |