| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0872 |
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| Symbol | |
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| ID | 3933316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 827859 |
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| End bp | 829175 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637903220 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_508814 |
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| Protein GI | 89053363 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0564449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.174455 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTG AGCTGACCGT GGGCTTCGGC TCCGTCTTTC TGATGGTTGC GCTGATCTGG
CTTGGACTGC ACGTGGCCGT CGCGCTGGCT GCGGCAAGCT TTCTGGGCGT CTGGCTGATC
CGTGGCGATG TGGAGCTTGC GGCGCGCCTT CTTGGACTTG CTGCCGAGGA CAGCATCGCG
TCCTACGTGT TTGGCGTGAT CCCGTTGTTC GTGCTGATGG GATTACTGGT GGAACGCGCC
GGTGTGGGCC GCGATGCCTT TGACGTGGGC GAAAGCGCGT TTCGGCGCAT CAAGGGCGGG
CTTGGTGTTG CTACGGTCGG AGCCAATGCG ATCTTTGCGG CGATCACCGG CGTCTCCATC
GCGTCGGCGG CGGTGTTCAC CAAGGTGGCC GTGCCGCAGA TGATCGACCG GGGCTATAAC
CCGCGCTTCG CTGTTGGGGT CGTGGCGGGA TCCTCGGTTC TGGGCATGCT GATCCCGCCG
TCGCTTCTGC TCATCATCTA TGGTGTGCTG GTCGAGGTTT CCATCGGCGA TCTGTTCCTT
GCGGGGATCC TTCCGGGGCT GTTGCTCGCG GTTCTCTATG CCATCGGCAT CCTTGTCATG
GCGCGCAAAA CGCCCGGCTT TGTGGGCACA CCTCCGGCGG AGGATGATGG GCGCCCCGGC
CTTGGCTGGC CCACAATCTG CGCCAAACTC TTCCCCATCG TCCTGCTGAT CGGGGCCGTG
TTCGGCGGGC TCTACGGCGG CTGGTTTACC CCGACAGAGG CCGGCGCGGT CGGCGCATTC
CTCGCCCTGC TCGTCGCCCT CGCCCGCCGT AGCCTGACCC CCGCACGCCT GTGGGAGGTG
CTGAAGGAAA CCGGCCACGT CACGGCTTCC ATCTGCATCC TGTTCGTGGC GGCGACGATG
TATTCGCGCA TGCTGGCGCT GTCGGGCTTT CCCAACGCCT TGGGCGATTG GCTGACCGCG
TCGCAGTTCG GCCTGACCGG CATCATCATC GCCTATGTCG CGCTGATCCT GATCCTTGGC
TCGATCCTGG ACAGCACGTC CATCATGCTG ATCACCGTGC CTCTCTTCGC GGGGCCCATC
GTGGCGCTTG GCGCGGATCT GATCTGGTTC GGCATCATCA CCATTATTGC GGTCGAGATC
GGATTGCTGA CCCCGCCCCT GGGAATATCG GCCTTTGTGG TGAAGGCCAA TCTTCAGGAC
GACCGCATCG GCCTGAAGGA TATTTTCCTC GGCGCCGCCC CCTTCGCAGG TATCATGCTG
ATCTGTCTGA TCCTCGTCAT TGTCTTCCCG GCCCTGTCAC TGGCCCTTAT CCGATAG
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| Protein sequence | MSFELTVGFG SVFLMVALIW LGLHVAVALA AASFLGVWLI RGDVELAARL LGLAAEDSIA
SYVFGVIPLF VLMGLLVERA GVGRDAFDVG ESAFRRIKGG LGVATVGANA IFAAITGVSI
ASAAVFTKVA VPQMIDRGYN PRFAVGVVAG SSVLGMLIPP SLLLIIYGVL VEVSIGDLFL
AGILPGLLLA VLYAIGILVM ARKTPGFVGT PPAEDDGRPG LGWPTICAKL FPIVLLIGAV
FGGLYGGWFT PTEAGAVGAF LALLVALARR SLTPARLWEV LKETGHVTAS ICILFVAATM
YSRMLALSGF PNALGDWLTA SQFGLTGIII AYVALILILG SILDSTSIML ITVPLFAGPI
VALGADLIWF GIITIIAVEI GLLTPPLGIS AFVVKANLQD DRIGLKDIFL GAAPFAGIML
ICLILVIVFP ALSLALIR
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