| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0854 |
|---|
| Symbol | |
|---|
| ID | 3933298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 809262 |
|---|
| End bp | 810542 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637903202 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_508796 |
|---|
| Protein GI | 89053345 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00337014 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.161189 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACA CGGCAGGTCT CGGCTCGGTC AATTGTACCT CCTGCGGCGC GGGCCTGTCG
GTTCTGGGCG GCGGGCGCGT GTTGTCCCAT GTCTGCGGCT ATTGCGGCGC AGTGCTGGAC
ACGCAGGACG GCTACAAGCA GGTCGACAGT ATCGGCAAGC GCAACCACCC CGACAGTCCC
GTGCAGATCG GCCAGACCCT GACGCTGGAC GGCGTGGAGT TCACGGTTAT CGGGACGCTT
GGCATCTCTG AGCGCTATGG CGGCCAGACG TGGAAATGGG TGGAACATCA GGTCTATTCG
CCGACCCACG GCTACCTGTG GCTGAACTAT GAAGAGGGCC AGCTGACCTA CACGCGCAAG
GTGCGCGACT TCAACATGCG CCATTGGCTG AGCGCATCGA CCGTGGAGCG CGCCGAGGTG
CCGCCGACAC GCACCTACCG CGACGAGAAG TACCGCTATT ATGACATGTC GGTCACGCAT
ATCGACTTCA TGGAGGGCGA GTTCAACTGG GTCCCCAAAC TGGGCGAGAA GAAGGAGGTC
GTGAACCTTC TGGGGCCGGA GGCGATGCTG TCGCTGGTCA AATCCCGGAC CGAGCGGGAG
GTGGAATTGA CCCGCCTGCT GCCCCGCGCC GAGACCGCGG CGGATCTGGG CATTTCGGAG
CAGGCCCTGG GCCGCGTGGG GGACGTGCAT CCCCTGACCC CCTACACCGC CCTGCCCGAG
GAGGGCCTTC TGCGGAAGGT GCTTGGTGCG ACGGCGATCG CGGCGGCGCT GTTGGGAGGC
GTCTTCTGGC TGAGCGGCGG GCGCGAGATC CTGTCGTCGC CGTATCAGCA GGTCACGTCC
CTGCCGCAAA CCTTCGAGTT CCAGGTCGAC AATACCACGC AGCTGGCGCA GGTGCAGTTC
CTGACCACGT TCAACAATCA ATGGGCCACC CTGGGGACTG AAATCCGCGG GCCGGACGGC
ACTGTGGTTC TGGCAGGTGA GCGCACGGTG TCGTATTACT CCGGCAGTTC CGGCGGGGAG
AATTGGTCCG AGGGCAGCCG CCGCAACACC TTCCGCTTCC GCCCCAGCAC GCCGGGCACC
TACACCGCGT CTTTGGCGCA AACCCAGGCG TCGAACCCCG ACAATGGGAC GGTGTCGCTG
CGCGTATCCC AGGGCAAACC GACGGGCTTT TGGCTGATTG GCCTGGCGAT TCTGGCTGGT
ATGGGGTGGC TGTACGTGGT GGGACGGCGC GCGATGCATT CGAAACGCCG GTTCTCCGGC
TCTGATTGGA ACGACGAGTG A
|
|---|
| Protein sequence | MTNTAGLGSV NCTSCGAGLS VLGGGRVLSH VCGYCGAVLD TQDGYKQVDS IGKRNHPDSP
VQIGQTLTLD GVEFTVIGTL GISERYGGQT WKWVEHQVYS PTHGYLWLNY EEGQLTYTRK
VRDFNMRHWL SASTVERAEV PPTRTYRDEK YRYYDMSVTH IDFMEGEFNW VPKLGEKKEV
VNLLGPEAML SLVKSRTERE VELTRLLPRA ETAADLGISE QALGRVGDVH PLTPYTALPE
EGLLRKVLGA TAIAAALLGG VFWLSGGREI LSSPYQQVTS LPQTFEFQVD NTTQLAQVQF
LTTFNNQWAT LGTEIRGPDG TVVLAGERTV SYYSGSSGGE NWSEGSRRNT FRFRPSTPGT
YTASLAQTQA SNPDNGTVSL RVSQGKPTGF WLIGLAILAG MGWLYVVGRR AMHSKRRFSG
SDWNDE
|
|---|
| |