| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0797 |
|---|
| Symbol | |
|---|
| ID | 3933240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 758266 |
|---|
| End bp | 760230 |
|---|
| Gene Length | 1965 bp |
|---|
| Protein Length | 654 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637903144 |
|---|
| Product | methylmalonyl-CoA mutase |
|---|
| Protein accession | YP_508739 |
|---|
| Protein GI | 89053288 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAG CCCAGAAAGA TCGCCCCTGG TTGATCCGCA CCTATGCCGG GCACTCGACG
GCGGAGGCGT CCAACGCGCT TTACCGGGGC AATCTGGCAA AGGGGCAGAC GGGTCTTTCA
GTGGCCTTCG ATCTGCCGAC CCAGACGGGC TATGACAGTG ATCACGTTCT GGCGCGGGGC
GAGGTTGGCA AGGTGGGCGT GCCGGTCAGT CATCTGGGCG ATATGCGCAC GCTGTTCAAG
GATATCCCGC TGGAGCAGAT GAATACGTCG ATGACGATCA ATGCCACCGC GCCGTGGCTG
CTATCGCTGT ATATCGCTGT GGCCGAGGAG CAGGGGGCCG ATGTCGCCAA GCTGCAAGGC
ACGGTCCAGA ACGATCTGAT GAAGGAATAC CTGTCGCGGG GCACCTATAT CTGCCCGCCG
AAACCCTCCA TGGCGATGAT CGCGGATGTG GCCGAATATT GCTACAAAGA GGTTCCGAAA
TGGAACCCGA TGAACGTGTG CTCGTACCAT TTGCAGGAAG CGGGTGCGAC GCCGGAGCAG
GAATTGGCTT TCGCGCTGGC CACCGCCATT TCGGTTCTGG ACGAATTGCG CCCCCGCGTG
CCGGAGGCGG ATTTCCCGGT GCTGGTCGGC CGCATTTCCT TCTTCGTGAA TGCGGGTATT
CGGTTCGTGA CCGAGATGTG CAAAATGCGT GCGTTTGTGG ATCTGTGGGA CGAGATTTGC
GAAACCCGCT ATGGCGTGTC TGACCCAAAA ATGCGGCGGT TCCGCTATGG CGTGCAGGTC
AATTCCCTGG GCCTGACCGA GCAGCAGCCG GAAAACAACG TCTACCGCAT TCTGATTGAA
ATGCTGGCCG TGACGCTGTC AAAAAAGGCC CGCGCCCGCG CCGTGCAATT GCCCGCCTGG
AATGAGGCGC TGGGCCTGCC GCGCCCCTGG GATCAGCAAT GGTCGATGCG GATGCAGCAG
ATCATGGCGT TCGAGACCGA TCTGTTGGAA TACGGCGATT TGTTTGACGG TAATCCCGTG
GTGGATGGCA AGGTTGCTGA ATTGAAAGAG GGCGCGCGGG CGGAATTGGC CAATCTGGAG
GGCATGGGCG GCGCCATTTC AGCGATTGAT TACATGAAGG GCCGTTTGGT GGAAAGCAAC
GCGGACCGGG TGAACCGGAT TGAGCGCGGC GAAACGGTGG TTGTGGGGGT GAACAAATAT
ACGGCGTCCG AGCCGTCTCC GCTATTGGGG GAGGATGGCG GGATCATGGT CGTCGATCCG
GCGGTGGAGC AGGACCAGAT CGCGCGGCTG GAGGCGTGGC GGGGCAGCCG TGATGCGGAC
GCGGTGCGCG CGACGTTGGA CGCCTTGGCC GACGCGGCGC GCGATGGGCG CAATGTCATG
CCGGCCTCCA TCCAGGCCGC GAAAGCGGGG GTTACGACGG GCGAATGGGC GGGCGTGATG
CGCGGCGTCC ACGGGGAATA TCGGGGGCCA ACCGGTGTCT CGGGCGCTGT GTCGAACAAA
ACCGAAGGAT TGGATGAGAT CCGAGATGCG GTTGATCTGG TCAGCGACAA ATTGGGTCGC
CGCCTGAAAT TCCTGGTCGG CAAACCGGGC CTTGACGGCC ATTCCAACGG GGCCGAACAA
ATCGCATTCC GCGCGCGCGA TTGCGGCATG GATATCAGCT ATGAAGGGAT CCGGCTGACG
CCGTCTGAAA TTGTCGCCGC GGCGAAGGCG GAAGAGGCCC ATGTGATTGG CCTGTCCATT
CTATCCGGCA GCCATGTTCC GCTGATCAAG GAGGTGATGG AATTGATCCG GGCCGAGGGT
CTTTCCATTC CCGTGATGGT TGGCGGTATC ATTCCCGACG ACGACCGCTC CACGCTTTTG
GGATACGGTG TGGCCCGGGT TTATACGCCC AAGGATTTCG AATTAAACCG GATCATGATG
GATATCGTGA CGCTGGTTGA CCCTACGGAA ATTGCTGCTG AATAA
|
|---|
| Protein sequence | MTQAQKDRPW LIRTYAGHST AEASNALYRG NLAKGQTGLS VAFDLPTQTG YDSDHVLARG
EVGKVGVPVS HLGDMRTLFK DIPLEQMNTS MTINATAPWL LSLYIAVAEE QGADVAKLQG
TVQNDLMKEY LSRGTYICPP KPSMAMIADV AEYCYKEVPK WNPMNVCSYH LQEAGATPEQ
ELAFALATAI SVLDELRPRV PEADFPVLVG RISFFVNAGI RFVTEMCKMR AFVDLWDEIC
ETRYGVSDPK MRRFRYGVQV NSLGLTEQQP ENNVYRILIE MLAVTLSKKA RARAVQLPAW
NEALGLPRPW DQQWSMRMQQ IMAFETDLLE YGDLFDGNPV VDGKVAELKE GARAELANLE
GMGGAISAID YMKGRLVESN ADRVNRIERG ETVVVGVNKY TASEPSPLLG EDGGIMVVDP
AVEQDQIARL EAWRGSRDAD AVRATLDALA DAARDGRNVM PASIQAAKAG VTTGEWAGVM
RGVHGEYRGP TGVSGAVSNK TEGLDEIRDA VDLVSDKLGR RLKFLVGKPG LDGHSNGAEQ
IAFRARDCGM DISYEGIRLT PSEIVAAAKA EEAHVIGLSI LSGSHVPLIK EVMELIRAEG
LSIPVMVGGI IPDDDRSTLL GYGVARVYTP KDFELNRIMM DIVTLVDPTE IAAE
|
|---|
| |