Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0721 |
Symbol | rpsA |
ID | 3933164 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 690962 |
End bp | 692638 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637903068 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_508663 |
Protein GI | 89053212 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0686992 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAAATA ACATGATGGA GGAATTCGAA GCCCTCCTGA ACGAAAGCTT CGAAATTGAC ACGCCCGACG AGGGGTCTGT TGTCAAAGGC AAGGTCATCG CGATTGAAGC AGGCCAGGCC ATCATCGACG TCGGCTACAA GATGGAAGGC CGTGTCGAGC TTAAAGAATT CGCGAATCCC GGTGAAGCGC CCTCGATCGA GGTCGGTGAC GAAGTCGAAG TTTACCTTCG CAACGTCGAG AACGCCCGTG GCGAGGCCGT GCTGTCGCAC GAGATGGCCC GCCGTGAGGC CGCCTGGGAT CGTCTGGAAA AGGCATATGC CGCGGAAGAG CGTGTCGAAG GCGCGATCTT TGGCCGCGTG AAGGGTGGTT TCACCGTGGA TCTGGGGGGC GCGGTTGCGT TCCTGCCCGG TTCTCAGGTT GACGTCCGTC CCGTGCGCGA TGCGGGCCCG CTGATGGGCC TCAAGCAGCC GTTCCAGATC CTGAAGATGG ACCGTCGCCG TGGCAACATC GTTGTCTCGC GCCGTGCGAT CCTGGAAGAA TCCCGCGCCG AGCAGCGCGC CGAGGTCATC GGCAAGCTGA ACGAAGGCGA CGTGGTCGAC GGCGTGGTCA AGAACATCAC CGAATACGGC GCATTCGTCG ATCTGGGCGG TGTGGACGGC CTGCTGCACG TCACCGACAT GGCCTGGCGC CGCGTCAACG ACCCCAAAGA GATCCTCACC ATTGGCGAGA CCGTCAAAGT GCAGGTGATC AAGGTCAACA AAGAGACGCA CCGCATCAGC CTTGGCATGA AGCAGTTGCA GGACGACCCA TGGGATGCTG TCGCGGCCAA ATACGCGCTG GACACCGTTC ACACGGGCCG CGTGACGAAC ATCACCGATT ATGGTGCGTT TGTTGAGCTG GAAGCCGGTG TTGAAGGCCT GGTCCACGTA TCCGAGATGT CCTGGACGAA GAAGAACGTC CATCCGGGCA AGATCGTCTC CACCTCCCAG GAAGTGGAAG TGATGGTGCT GGAGATCGAC ACCGTGAAGC GTCGCGTGTC CCTTGGCCTC AAGCAGACCA TGCGCAACCC ATGGGAAGTG TTCGCCGAGA GCCACCCCGA GGGCACGCAG GTTGAAGGTG AAGTCAAGAA CATCACCGAG TTCGGTCTGT TCGTGGGTCT TGAAGGCGAG ATCGACGGCA TGGTCCACCT GTCCGACCTG ACATGGGAAG GCCGTGGCGA AGACATGATC GGTGAGTTCC GCAAGGGCGA CATCGTGAAG GCCGTCGTCA CCGAGGTCGA CACCGACAAG GAGCGTATCA GCTTGTCCAT CAAGGCGGTC GACGGCGATC CCTTCGGCGA GACCATCGAG GGCGTGAAGC GCGGCTCCAT CATCACCGTT GAAGTGACGG CGATTGAAGA TGGCGGCATT GAGGTGGACT ACGAGGGCAT GAAGTCCTTC ATCCGCCGCT CTGATCTGTC CCGTGATCGC TCCGAGCAGC GCCCTGAGCG CTTCCAGGTC GGCGACAAGC TGGACGTCCG GGTCACCAAC ATCGACGCGA AGTCGCGCCG TCTGGGTCTG TCGATCAAGG CGCGTGAGAT CGCGGAAGAG AAAGAGGCCG TGGAACAGTT CGGCTCCTCC GACTCCGGTG CGTCGTTGGG CGATATCCTT GGCGCGGCGC TGAAGCAGGA CGACTAA
|
Protein sequence | MANNMMEEFE ALLNESFEID TPDEGSVVKG KVIAIEAGQA IIDVGYKMEG RVELKEFANP GEAPSIEVGD EVEVYLRNVE NARGEAVLSH EMARREAAWD RLEKAYAAEE RVEGAIFGRV KGGFTVDLGG AVAFLPGSQV DVRPVRDAGP LMGLKQPFQI LKMDRRRGNI VVSRRAILEE SRAEQRAEVI GKLNEGDVVD GVVKNITEYG AFVDLGGVDG LLHVTDMAWR RVNDPKEILT IGETVKVQVI KVNKETHRIS LGMKQLQDDP WDAVAAKYAL DTVHTGRVTN ITDYGAFVEL EAGVEGLVHV SEMSWTKKNV HPGKIVSTSQ EVEVMVLEID TVKRRVSLGL KQTMRNPWEV FAESHPEGTQ VEGEVKNITE FGLFVGLEGE IDGMVHLSDL TWEGRGEDMI GEFRKGDIVK AVVTEVDTDK ERISLSIKAV DGDPFGETIE GVKRGSIITV EVTAIEDGGI EVDYEGMKSF IRRSDLSRDR SEQRPERFQV GDKLDVRVTN IDAKSRRLGL SIKAREIAEE KEAVEQFGSS DSGASLGDIL GAALKQDD
|
| |