Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0624 |
Symbol | |
ID | 3933066 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 596769 |
End bp | 597833 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637902970 |
Product | ribosomal large subunit pseudouridine synthase C |
Protein accession | YP_508566 |
Protein GI | 89053115 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGGCG TTCAGACGCT GGAAATCGGG CCGGACGACG GCGATCAACG GCTGGACCGC TGGTTCCGCC GCATCTTTCC CCATGTGCCC CAGGGTCGGA TCGAGAAGAT GTGCCGCAAG GGCGAGATCC GCGTCGATGG AGGCCGGGTG AAGTCCAACA CCCGGCTGGA AGTGGGGCAG ATGGTCCGCG TACCGCCCCT GCCCGATGCT GCCGATCCAA AGGCGGATCC GGCAAACTGG GTCAACAACG CCAGTCGCAT CAGTGACGCG GATGAGAAGA TGATCCGCGC CGCCGTGATC TATCGCGACG ACCATATCAT CGCGATCAAC AAGCCCGCGG GCCTGCCGAC CCAGGGCGGC ACCGGGCAGA GCCGCCATGT GGATGGGCTG GCGGAGGCGT TGAAGTTCGG GCTGGAGGAC AAGCCGAGGC TGGTGCACCG GCTGGACAAG GACACGTCGG GCGTGCTGCT GATGGCGCGC ACGCGGATGG GGGCGAAGGC GCTGACCGAT GCGTTTCGGC TGCGCTCCAC CCGGAAGATC TATTGGGCTG CCGTTGCGGG ATCGCCCCTG CCGCGCATGG GGACGATCAA GCTGGGGCTG GTGAAAGCGC CGGGCCATGG GCGCGGTGGC GAGAATGAGA AGATGCGCGC CGTGCCGGTG GACGAGATCG CCCAGGTGGA TGGGGCCAAG CGGGCCGAGA CTGATTACGC GGTGATGTCC AACCTTGGCG GTCGCGTGTG CTGGTGCGCG CTGGTGCCGA TTACGGGGCG GACGCATCAG CTGCGCGCCC ACATGGCCGA GATCGGGCAT CCGATCATCG GTGACGGAAA GTATGGCGGC AGCGGGCAGG AGAACCTTGG CGACGGTTGG GGCGCGCAAT TGGGCGGAGA GATCAGCCGC AAGCTGCATC TTCACGCGCG CAGCCTGTCG TTTCGGCACC CGATGACGGG CGCGCAGGTC AATCTGGTCG CGCCGCTGCC CGAGCATATG GCGAAGACGT GGGACACCCT CGGCTGGGAC CCGCGCGATG TGCCCGCAGA CCCGTTCGAG GATGATGCGT TTTGA
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Protein sequence | MSGVQTLEIG PDDGDQRLDR WFRRIFPHVP QGRIEKMCRK GEIRVDGGRV KSNTRLEVGQ MVRVPPLPDA ADPKADPANW VNNASRISDA DEKMIRAAVI YRDDHIIAIN KPAGLPTQGG TGQSRHVDGL AEALKFGLED KPRLVHRLDK DTSGVLLMAR TRMGAKALTD AFRLRSTRKI YWAAVAGSPL PRMGTIKLGL VKAPGHGRGG ENEKMRAVPV DEIAQVDGAK RAETDYAVMS NLGGRVCWCA LVPITGRTHQ LRAHMAEIGH PIIGDGKYGG SGQENLGDGW GAQLGGEISR KLHLHARSLS FRHPMTGAQV NLVAPLPEHM AKTWDTLGWD PRDVPADPFE DDAF
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