Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0349 |
Symbol | dapD |
ID | 3932790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 353095 |
End bp | 353922 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637902694 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_508291 |
Protein GI | 89052840 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.578852 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAACG CTCAGCTAGA GACCGCTATC GAGGCCGCAT GGGAGGCCCG TGATACGATC ACCCCCGCCA CCATGGGCGA GACCCGTGAA GCGATTGAAG ATACGCTGGC CGCTTTGGAC GGCGGCACGC TGCGTGTGGC CGAGAAGCAG GACAGCGGCG ACTGGCATGT GAACCAATGG GCCAAGAAGG CGGTGCTTCT GGGCTTCCGC CTGAAAGATA TGGAGATGCA GGGCGGCTCC GCGCAGGGCG GCAGCTGGTG GGACAAGGTC GACAGCAAAT GGGCCACCTG GGGCGATAAT GAGTGGGGCG CCGCAGGCTT CCGTGCCGTG CCCAACTGCG TCGTGCGCAA GTCCGCCTAT ATCGCGCCCG GCGTGGTGCT GATGCCGTCG TTTGTGAACC TCGGCGCCTA TGTCGATAGC GGCACGATGG TCGACACCTG GGCCACCGTC GGCTCCTGCG CGCAGATCGG CAAGAACGTG CATCTCTCGG GTGGCGTCGG CATCGGCGGC GTGTTGGAGC CGATGCAGGC CGGCCCCACG ATTATTGAGG ACAATTGCTT CATCGGCGCG CGCTCGGAAG TCGTGGAAGG CTGCATCGTG CGCGAAGGCT CCGTCCTTGG CATGGGCGTC TTTATCGGCC AGTCGACCAA GATCGTGGAC CGCGAGACCG GCGATGTGAT GTATGGCGAA GTGCCGTCAG GGTCCGTTGT CGTGGCGGGC TCCCTCCCGT CCAAGAACGG CGTGAACCTT TACTGCGCGG TCATCGTGAA GCGCGTGGAT GAGAGGACGC GCTCCAAAAC CTCCATCAAC GAGCTGTTGC GCGACTGA
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Protein sequence | MSNAQLETAI EAAWEARDTI TPATMGETRE AIEDTLAALD GGTLRVAEKQ DSGDWHVNQW AKKAVLLGFR LKDMEMQGGS AQGGSWWDKV DSKWATWGDN EWGAAGFRAV PNCVVRKSAY IAPGVVLMPS FVNLGAYVDS GTMVDTWATV GSCAQIGKNV HLSGGVGIGG VLEPMQAGPT IIEDNCFIGA RSEVVEGCIV REGSVLGMGV FIGQSTKIVD RETGDVMYGE VPSGSVVVAG SLPSKNGVNL YCAVIVKRVD ERTRSKTSIN ELLRD
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