Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0280 |
Symbol | |
ID | 3932718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 286144 |
End bp | 287049 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637902623 |
Product | LysR family transcriptional regulator |
Protein accession | YP_508222 |
Protein GI | 89052771 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.174455 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCGTC TCACAGAAAT GGAAGCCTTC GCCACCGTTG TGGATCAAGG CGGCTTCACC GACGCCGCGA AGAAGATGGG GATTTCCAAA TCCGCCGTGT CCAAACACGT CTCTTCGCTG GAGGCCCGTC TGGGTGCGCG GCTGCTGAAC CGAACCACAC GCCGTGTGTC GCCAACGGAA ATCGGCCTTG CCTATTATGA CCGCGCCCGC CGCGTCCTGA ACGATGCCGG AGAGGCCGAT GCCCTCGTCA CCGCCATGCA ATCCGCGCCG TCCGGCACGC TGCGCGTCTC TATCGCCACC GATTTCGGGG TGAACCACGT CTCTCCCATT CTTGGCGAGT TTCTGCATGC CTTTCCCGAC ATCACCGTGA ACATGGTCCT CAACAACCGG TATGTGGAGC TGATCTCGGA AGGGTTCGAT ATGGCGATCC GCGTGGGGGA GCTGGAAGAC AGTTCGCTGA TGGCACGCAA GATCTGCGAG ACCCAGCGCC GGATGATCGC CGCGCCGTCG TATTTCGAAG AATACGGGCG GCCTGAGCGG ATCGATGACC TGAATGAGCA CAAGCTGCTG CATTACTCCA ACTCCAGCGC CGGGAACGTC TGGAAAATCA CTGCCCCCTC GGGTGAGTTG CGCCAAGTGC GCACCGCCGG TTGGCTGACC GTGAATGATG GTCAAAGCCT TCTGAATGCT GCCATCGGAG GGTTGGGCAT CGCCTATCTT CCCAGTTTCC TCTATGCCGA ACCGCTTCGT CAGGGCCTAT TGGTCGACGC GATGCCGGAT CTGCCCACGG ATGTTCAAGG CGTCTATGCC GTCTATCCAC CGGGCCGCTA CATCCAGCCC AAGGTTCGCT CCTTCATCGA TTACCTGGTC GAAGCCTTCC GCGACAAAGG CCCCGAAGAC TGGTGA
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Protein sequence | MDRLTEMEAF ATVVDQGGFT DAAKKMGISK SAVSKHVSSL EARLGARLLN RTTRRVSPTE IGLAYYDRAR RVLNDAGEAD ALVTAMQSAP SGTLRVSIAT DFGVNHVSPI LGEFLHAFPD ITVNMVLNNR YVELISEGFD MAIRVGELED SSLMARKICE TQRRMIAAPS YFEEYGRPER IDDLNEHKLL HYSNSSAGNV WKITAPSGEL RQVRTAGWLT VNDGQSLLNA AIGGLGIAYL PSFLYAEPLR QGLLVDAMPD LPTDVQGVYA VYPPGRYIQP KVRSFIDYLV EAFRDKGPED W
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