Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0198 |
Symbol | rho |
ID | 3932635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 189047 |
End bp | 190255 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637902540 |
Product | transcription termination factor Rho |
Protein accession | YP_508140 |
Protein GI | 89052689 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGAAG AGCTTGAGAT CGAGAACGCT TCCACCATGC GGAAGGGGGA TATGATGTTC GAGATCCTCC GAGAGCGGGC TGACGAGGGT TGGGAGATCT CCGGTGACGG TGTGTTGGAA GTGTTGCAGG ATGGGTTCGG ATTCTTACGC AGTCCTGAGG CCAACTACTT GGCCGGGCCC GACGATATCT ACGTCTCACC GGATATGATC CGACAACACT CGCTGCGTAC GGGTGACACC GTTGAAGGCG TCATGTCCGC ACCTAAGGAA AACGAGCGGT ATTTCTGCCT GGTGAACGTC ACGCAGATCA ACTTTGAAGA ACCTGAGAAG GCAAAGCACA AGGTAGCGTT TGATAACCTG ACACCGCTGT ATCCCGATCA GCGGATGAAC ATGGAGATTG AGGATCCCAC GATCAAGGAC CGGTCTGCCC GAATTATTGA TCTGGTGTCG CCGATCGGTA AGGGGCAGCG AAGCCTGATT GTGGCACCGC CGCGGACGGG CAAGACGGTT CTGCTTCAGA ATATTGCTCA TTCGATCGAG ACCAATCACC CGGAGTGCTA TCTGATCGTA CTTCTGATCG ACGAGCGGCC GGAAGAGGTC ACCGATATGC AGCGCTCGGT CAAGGGAGAG GTGATTTCCT CCACCTTTGA TGAGCCCGCG ACCCGCCACG TGGCTGTCTC GGAGATGGTG ATCGAGAAGG CAAAACGTCT GGTGGAGCAC AAGCGGGACG TTGTGATCTT GCTGGACTCA ATCACGCGCT TGGGTCGAGC TTTCAACACG GTTGTTCCCT CTTCTGGCAA GGTTCTGACC GGTGGTGTTG ATGCGAACGC CCTGCAGCGC CCGAAGCGGT TCTTCGGTGC AGCGCGGAAT ATTGAGGAAG GTGGATCGTT GACGATCATC GCGACGGCAT TGATCGATAC AGGAAGCCGG ATGGACGAAG TGATCTTTGA GGAGTTCAAA GGAACGGGCA ACAGCGAGAT CGTTCTGGAT CGCAAGATTG CCGACAAGCG CGTGTATCCT GCCATGGACA TTCTGAAGTC CGGCACGCGG AAGGAAGATC TTCTCGTGGA CAAGGGCGAC TTGCAGAAAA CGTTTGTGTT GCGGCGCATT CTGAACCCGA TGGGCACGAC GGACGCGATC GAATTCCTGA TTTCCAAGTT GAAACAGACA AAAACGAACT CAGAATTCTT CGATTCCATG AATACCTGA
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Protein sequence | MAEELEIENA STMRKGDMMF EILRERADEG WEISGDGVLE VLQDGFGFLR SPEANYLAGP DDIYVSPDMI RQHSLRTGDT VEGVMSAPKE NERYFCLVNV TQINFEEPEK AKHKVAFDNL TPLYPDQRMN MEIEDPTIKD RSARIIDLVS PIGKGQRSLI VAPPRTGKTV LLQNIAHSIE TNHPECYLIV LLIDERPEEV TDMQRSVKGE VISSTFDEPA TRHVAVSEMV IEKAKRLVEH KRDVVILLDS ITRLGRAFNT VVPSSGKVLT GGVDANALQR PKRFFGAARN IEEGGSLTII ATALIDTGSR MDEVIFEEFK GTGNSEIVLD RKIADKRVYP AMDILKSGTR KEDLLVDKGD LQKTFVLRRI LNPMGTTDAI EFLISKLKQT KTNSEFFDSM NT
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