| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0088 |
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| Symbol | |
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| ID | 3932524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 82789 |
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| End bp | 84708 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637902429 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_508030 |
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| Protein GI | 89052579 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATC GCCCCTCCAC CCCGCTCTTG GACAACGTCC AATCTCCTAA CGACCTCAAA
GGGTTGAGTG ACTTTGATCT CAAGCGTCTG GCCGATGAGC TGCGCGCCGA GATGATCTGG
ACGGTGAGCA AGACGGGCGG GCATTTCGGG GCCGGTCTGG GTGTGGTGGA ACTGACGGTC
GCGCTGCACT CCGTCTTTGA CACGCCGCGC GACAAGCTGG TCTGGGACGT CTCGCACCAA
TGCTACCCGC ATAAGATCCT GACCGGGCGG CGGGATCAGA TGCTGACGAT CCGCCAGAAA
GACGGGCTGT CCGGCTTCAC GAAACGCAGC GAGTCGCCGT TTGATCCCTT TGGCGCGGCG
CATTCCTCCA CGTCGATTTC CGCCGCGCTG GGCTTTGCCG TCGCACGCGA TCTGGGTGGC
GATAGCGATA CCGGCCACGG CGATGCGATT GCGGTGATCG GGGATGGGGC GATGTCCGGC
GGCATGGCGT TTGAGGCGAT GAACAATGCG GGGCATCTGG GCAAGCGCCT GATCGTGATC
CTAAATGACA ATGAGATGTC GATTGCCCCG CCCACGGGCG CGCTTTCATC TTATCTGTCA
AGGCTTTACG CAGGGGCTCC GTTCCAGGAA TTCAAGGCCG CCGCCAAGGG TGCCGTGTCC
CTGCTGCCAG AGCCGTTCCA GGAAGGCGCC CGCCGTGCGA AGGAGTTGCT GAAATCCGCG
ACCGTCGGCG GGACGCTGTT TGAAGAGTTG GGCTTTTCCT ATGTCGGCCC CATCGACGGC
CACGATATGG AAAGCCTTCT GTCGGTTCTG CGCACCGTCA AAGCCCGCGC CGATGGCCCG
ATCCTGATCC ACGCGATCAC GAAGAAGGGG AAGGGATATT CGGAACATCG CGCGGATCGC
GGCCACGCCA CCGCCAAGTT CAACATCGCC ACCGGAGAGC AGGTGAAAGC GCCCTCCAAC
GCGCCAAGCT ACACCAAAGT CTTCGCCCAA AGCCTGATTG CAGAGGCCGA AGATGACCCC
AAGGTCGTGG CGGTGACGGC GGCGATGCCC GATGGCACCG GCCTTGATCT ATTTGCCGAA
CGCTTCCCAA GCCGCTGTTT TGACGTGGGA ATTGCCGAGC AACATGGCGT GACTTTTGCC
GCAGGTATGG CTGCCGGGGG CCTGAAACCC TTCGCGGCGA TCTATTCCAC CTTCCTGCAA
CGGGGCTATG ATCAGGTGGT CCACGACGTC GCGATCCAGC GGCTTCCGGT CCGCTTTGCC
ATCGACCGTG CAGGTCTTGT CGGCGCGGAT GGCTGCACCC ACGCGGGCAG CTACGACATC
AGCTACCTTG CCAACCTGCC CGGGTTCGTC GTTATGGCCG CCGCCGATGA GGCAGAGTTG
CGCCACATGG TCCGCACCGC GCTGGAAATT GATGACCGCC CCAGCGCGTT CCGCTTTCCC
CGTGGCGAAG GTATGGGCGT GGATATGCCG GATCGCGGTA CCGCGCTGGA GATCGGAAAA
GGTCGCATGA TTTCAGAGGG TAACAGGGTC GCGATCCTGA ATTTTGGCAC CCGTTTGAAA
GAGGTGCAGG AGGCCGCCGA GACCCTGTCC CAACGTGGCA TCACCCCAAC AATCGCCGAC
GCGCGCTTCG CCAAACCGCT GGACGAGGCG CTGATCCTGC AACTCGCCCG CCACCACGAG
GCGCTGATCA CCGTAGAAGA AGGTGCTGTC GGTGGGTTCG GATCCCATGT CGCGCACTTG
CTTGCCGAAA ACGCGGTGTT TGATACCGGG ATCAAGTACC GCTCCATGGT GCTGCCCGAT
ATCTTCATTG ATCAGGCCAG CCCAAAGGAC ATGTACGCCG TCGCGGGGAT GAATGCGGAG
GATATCGTGG CCAAGGTTCT GACGACTTTG GGGGTCGAGG TGCTGAGCCA GCGGGCCTAG
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| Protein sequence | MSDRPSTPLL DNVQSPNDLK GLSDFDLKRL ADELRAEMIW TVSKTGGHFG AGLGVVELTV
ALHSVFDTPR DKLVWDVSHQ CYPHKILTGR RDQMLTIRQK DGLSGFTKRS ESPFDPFGAA
HSSTSISAAL GFAVARDLGG DSDTGHGDAI AVIGDGAMSG GMAFEAMNNA GHLGKRLIVI
LNDNEMSIAP PTGALSSYLS RLYAGAPFQE FKAAAKGAVS LLPEPFQEGA RRAKELLKSA
TVGGTLFEEL GFSYVGPIDG HDMESLLSVL RTVKARADGP ILIHAITKKG KGYSEHRADR
GHATAKFNIA TGEQVKAPSN APSYTKVFAQ SLIAEAEDDP KVVAVTAAMP DGTGLDLFAE
RFPSRCFDVG IAEQHGVTFA AGMAAGGLKP FAAIYSTFLQ RGYDQVVHDV AIQRLPVRFA
IDRAGLVGAD GCTHAGSYDI SYLANLPGFV VMAAADEAEL RHMVRTALEI DDRPSAFRFP
RGEGMGVDMP DRGTALEIGK GRMISEGNRV AILNFGTRLK EVQEAAETLS QRGITPTIAD
ARFAKPLDEA LILQLARHHE ALITVEEGAV GGFGSHVAHL LAENAVFDTG IKYRSMVLPD
IFIDQASPKD MYAVAGMNAE DIVAKVLTTL GVEVLSQRA
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