Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0032 |
Symbol | |
ID | 3932468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 29017 |
End bp | 30189 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637902373 |
Product | major facilitator transporter |
Protein accession | YP_507974 |
Protein GI | 89052523 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACATCCC CCCCGGACGC CCCCGAGGGC TCCGTCAAAC GTCTGATCCA GATCCTGTCG GTGACGAATT TCGTCATCGG TATGGGGGCG TTTATGGTCA TCGGTATGTT GCCTCCGATG GCCGAGAGCT TGGAGATGTC CACCGCCGGA TCCGGCTGGA TCATGACGAT CTACGCGATC TCCTATGCCA TCGCCTCGCC CTTGCTGGTG TCCAGCACCG GCGGGATCGG GCGGCGCAAG GTGCTGTTCC TGGGTCTGGC CGTTTTCACG CTCGCCAACC TGCTTGCGGC AATCGCGCCG AGCGGAGCGG TGGTGCTGAT CGCCCGTGCG TTCGCCGCGG CAGGGGCCGG TATGGTGACG CCGGTGGCGG CGGCTGTCGT GGCGGGCGTC GTGGCACCCG AGCGGCGGGC GAAATCGCTG GCGGCGGTGT TTTTTGGGCT GACGTTGGCA CAGGTGATCG GCGTGCCCGC GGGCAGCTAC ATCGCCTATT CGATTGGTTG GCGCTACGCC TTCATCCTCG TCACGCTTCT GGCACTGCCC TGTCTCTGGC TGATCTGGAC CCGCGTGCCC CGGGGCCTTC GGTTTCAACC GGTGGGCCTG CGCGATCTGA GCGCGGTCCT GGCCGATTGG CGCATCATGC TGGCCGTTCT CTTTACCGCC ACGTTCCTTG CCGCAATCTA TGTGCCCTTC ACCTATATTG CCCCGCTGAT GGAGGCGCAT ATGGGCTTCG GCCGTGACGG CATCAGCAGC GTATTGCTGA CCTTCGGGCT CGCCGCTGTC GTTGGCAACC TTCTGGGCGG TTGGATGTCG GATCGCTTTG GCCCCACACC CACGCTGATG CTGCTGGCCA TCACGCAGGT GCTGCTGATG CCGTTTCTGT CTTTTCTGCC GATGGCGGCC TGGATGGTAT TCGCGCTGAT CTTCACCTGG TCGATCTTCG GCTGGTCGTT CACCGCGCCG CAACAGGCCC GTGTCATCAG CCTCGCGCCC GACCGTGCGC CCGTGGTTTT GTCCCTGAAT GCGGCGGCGA TCTATGTGGG GGCTGCCGTG GGGGCGTCCG TCGGTGGGGC AGCGATCTCG CAATCCGGGC TGCTGGCGCT TGGCTGGGTT GGGGGCGCTA TGGCGCTTGT GGGTGTGGCG CACCTGTTGG TGTCGGCCCG GATCAGCCGC TAG
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Protein sequence | MTSPPDAPEG SVKRLIQILS VTNFVIGMGA FMVIGMLPPM AESLEMSTAG SGWIMTIYAI SYAIASPLLV SSTGGIGRRK VLFLGLAVFT LANLLAAIAP SGAVVLIARA FAAAGAGMVT PVAAAVVAGV VAPERRAKSL AAVFFGLTLA QVIGVPAGSY IAYSIGWRYA FILVTLLALP CLWLIWTRVP RGLRFQPVGL RDLSAVLADW RIMLAVLFTA TFLAAIYVPF TYIAPLMEAH MGFGRDGISS VLLTFGLAAV VGNLLGGWMS DRFGPTPTLM LLAITQVLLM PFLSFLPMAA WMVFALIFTW SIFGWSFTAP QQARVISLAP DRAPVVLSLN AAAIYVGAAV GASVGGAAIS QSGLLALGWV GGAMALVGVA HLLVSARISR
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