Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | JJD26997_1083 |
Symbol | ligA |
ID | 5390553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter jejuni subsp. doylei 269.97 |
Kingdom | Bacteria |
Replicon accession | NC_009707 |
Strand | - |
Start bp | 955298 |
End bp | 957241 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 640862084 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_001398174 |
Protein GI | 153952455 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.88186 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAAAG AAGAGTATTT AGAAAAAGTT GCTTTAGCAA ATTTGTGGAT GAGAGCATAT TATGAAAAAG ATGAACCCTT GGCTAGTGAT GAAGAATACG ATGCTTTAAT CAGAGAATTA AGAGTTTTTG AAGAACAAAA TAAAGATGAA GTTTCAAAAG ACTCTCCAAC GCAAAAAATA GCTCCTACCA TACAAAGCGA GTTTAAAAAA ATAGCTCATT TAAAGCGTAT GTGGTCGATG GAAGATGTAT TTGATGAGAG TGAGCTTAGG GCTTGGGCAA AACGCGCAAA ATGTGAAAAA AACTTTTTTA TAGAGCCTAA ATTTGATGGA GCGAGTTTAA ATTTGCTTTA TGAAAATGGT AAATTAGTAA GCGGTGCCAC TAGGGGCGAT GGCGAAGTGG GTGAGGATAT AACGCTTAAT GTTTTTGAGA TAGAAAATAT ACCTAAAAAT ATAGCCTATA AAAAAAGGAT AGAAATTCGT GGAGAGGTAG TGATTTTAAA AGATGATTTT GAAAAAATTA ACGAAAAAAG AGCCCTTTTA AATCAAAGTT TATTTGCTAA TCCACGCAAT GCTGCAAGTG GGAGTTTAAG GCAGCTTGAT ACAAGTATCA CCAAAGAAAG AAATTTGAAA TTTTATCCTT GGGGAGTAGG GGAAAATACC TTAAATTTCA CCAAACACAG TGAGGTGATG CAATTTGTTA GAGATCTTGG TTTTTTAAAA GATGATTTTA TTAAACTTTG TGCTAATTTA GACGAGGTTT TAAAAGCTTA TGATGAGCTT TTAACTTTAA GAGAAAAAAA GCCTATGATG ATGGATGGTA TGGTTGTAAG AGTTGATGAT CTTGCACTTT GTGAAGAACT AGGCTATACG GTAAAATTTC CAAAATTTAT GGCAGCTTTT AAATTTCCTG CACTTGAAAA AACCACGCGT TTAATAGGGA TAAATTTACA AGTTGGAAGA AGTGGGGTGA TCACTCCTGT GGCGGTTTTA GAGCCTGTAA ATTTAGATGG GGTTGTAGTA AAATCAGCCA CACTTCATAA TTTTGATGAG ATTGCAAGAC TTGATGTTAA AATCAATGAT TTTGTAAGCG TGATAAGAAG TGGTGATGTT ATCCCTAAAA TCACTAAGGT TTTTAAAGAG CGTAGAGAAG GTTTAGAGAT GGAAATTTCA CATCCTAAGC TTTGTCCTAC TTGCCAAAGT GAGCTTTTGG ATGAAGGAAC TTTAATAAAA TGTCAAAATA TAGACTGTGA AGATAGACTT GTAAATTCTA TCATTCATTT TGTTTCTAAA AAATGTCTTA ATATCGACGG ACTTGGAGAA AATATAGTAG AGCTTTTATA CAAGCACAAA AAAATCACTA CGCTTGAGAG TATTTTTCAT TTAAAATTTA GTGATTTTGA AGGTTTGGAA GGCTTTAAAG AAAAGAAAAT CAACAATCTT TTAAATGCCA TAGAACAAGC CAGAGAATGC GAACTTTTTC GTTTTATCAC GGCTTTAGGG ATAGAGCATA TTGGCGAGGT TGCGGCTAAA AAATTAAGCT TAAGTTTTGG TAAAGAATGG CACAAGCAAA GCTTTGAAGC TTATGTTAAT TTAGAAGGTT TTGGTGAGCA AATGGCTTTA AGTCTTTGTG AATTTACGCG TGTTAATCAT ACAAGAATTG ATGAGTTTTA CAAGCTTTTA AATTTAAAAA TAGAAAAACT TGAAGTTAAA AGCGATAGTG TGATTTTTGG TAAAACTTTT GTGATTACAG GTACTCTTTC ACGCCCAAGA GATGAGTTTA AGGCTTTGAT AGAAAATCTT GGGGGTAAAG TAAGTGGCTC AGTTTCTAAA AAGACTGACT ATGTGCTTTT TGGAGAAGAG GCAGGTTCTA AGCTTAGCAA GGCTAAAGAG CTTGAAGTAA AATGTATAGA TGAAAGTGCT TTTAATGAGC TTGTTAAAGA ATAG
|
Protein sequence | MKKEEYLEKV ALANLWMRAY YEKDEPLASD EEYDALIREL RVFEEQNKDE VSKDSPTQKI APTIQSEFKK IAHLKRMWSM EDVFDESELR AWAKRAKCEK NFFIEPKFDG ASLNLLYENG KLVSGATRGD GEVGEDITLN VFEIENIPKN IAYKKRIEIR GEVVILKDDF EKINEKRALL NQSLFANPRN AASGSLRQLD TSITKERNLK FYPWGVGENT LNFTKHSEVM QFVRDLGFLK DDFIKLCANL DEVLKAYDEL LTLREKKPMM MDGMVVRVDD LALCEELGYT VKFPKFMAAF KFPALEKTTR LIGINLQVGR SGVITPVAVL EPVNLDGVVV KSATLHNFDE IARLDVKIND FVSVIRSGDV IPKITKVFKE RREGLEMEIS HPKLCPTCQS ELLDEGTLIK CQNIDCEDRL VNSIIHFVSK KCLNIDGLGE NIVELLYKHK KITTLESIFH LKFSDFEGLE GFKEKKINNL LNAIEQAREC ELFRFITALG IEHIGEVAAK KLSLSFGKEW HKQSFEAYVN LEGFGEQMAL SLCEFTRVNH TRIDEFYKLL NLKIEKLEVK SDSVIFGKTF VITGTLSRPR DEFKALIENL GGKVSGSVSK KTDYVLFGEE AGSKLSKAKE LEVKCIDESA FNELVKE
|
| |