| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_2077 |
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| Symbol | |
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| ID | 8384371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhabdus utahensis DSM 12940 |
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| Kingdom | Archaea |
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| Replicon accession | NC_013158 |
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| Strand | + |
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| Start bp | 2105531 |
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| End bp | 2107249 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644973146 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_003130977 |
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| Protein GI | 257053144 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.35562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACGGACG ACGATGACGA GACGGGGTCG CCCCCCTCGC CTGAACAGCG TCGCTCGACG
CACGAGGAGA CTCGACATTC GCGGGAGACG ACAGTACGGT GGTTCGGCAC CGAGTTCGAC
CCTGTTGTCC TGGTCGGATC GCTTGCAATC ATCGTCGTCG GCGTCGTGCT CACGGTCGGG
TTCGGCGACC AGGCGTCGGT GGCCTATCGC GCGACGTTCG CCTTCGTGAA CGAATCCTTC
GGCTGGTTGT ATGTCCTTGC GGTCAACGTG TTTCTTGTCG CACTCGTCGC GATCGGGTTG
AGCGACTACG GGACGATCAG ACTCGGTGGT CCCGACGCCG AGCCGGAGTT TTCCACGCTG
GGATGGGTGG CGATGCTGTT CAGCTCCGGG ATGGGCGTTG GCCTGCTGTT TTTCGGTGTC
GCTGAACCGA TCAGTCACTT CGTCTCCGGT GGCGGCTCGT TTTTCGACGT CCCACCGAAC
ACCCCCGAGG CAGGCCGGGC CGCCACGGCC CTCACGATGT TTCACTGGGG GCTGCACCCC
TGGGGAATCT ACGGCATCGT CGGGCTTGCA CTCGGGTATT TCTCCTACAA TCGCGGCCTC
CCGTTGAGCT TTCGCTCCAT CTTCTATCCA CTGGTCGGCG AGCGGATTCA CGGCTGGGCG
GGGCGACTCA TCGACCTCGC GGCAGTCGTC GCGACCGTCG TCGGGCTCGC GACGGCCACC
GGACTGGCGG CGCTCCAGAT CACCGCCGGG GTCGACTTTC TCACGACGAC CTATCTGGGG
ACGGCACTCG CGACCGATGT GTGGACCGCG GCGACCATCG CGACGGCACT CATCGGCGTG
ACAGTCGTCT CGACGTGGCT GGGTCTCGAG AACGGCATCA GGCGTCTCTC GAAGCTGAAC
GTCGTGCTGA TGGTCGCGTT GCTCGTCGTG GTGTTGCTCG TCGGGGACAC AGTCCACCTC
TTCGACGTGT TTCTCGAAGG GGTCGGGACC TACCTCGGCA ACTTCGTGGA ATTGAGTCTC
TATACCGAGG CCTTCGCGGG CGAGGCGGCG GGATGGCAAC ACGCGTATAC GATATTCTAC
TGGGGATTCT GGACCGTCTG GTCGCCGTTC GTCGGCCTGT TCATCGCTCG CATTTCCAGG
GGGCGGACGA TCCGGGAGTT CGTCGGTGGC GTCTTGGTCG TGCCAGTCCT GTTTTCGCTG
GGCTGGATGG CTGTCTTCAA CGGTTCGGCG TTGTTCGTCG AGCTCTCAGT CGCCGAGGGG
GCGATTAGCG GCCCCCTGCA GGAACACGGC CCCGCAGTCG CGCTGTTCGA GATGTTTTCC
GTCTACCCGC TTGCGTTCCT GACGGCCGCG ATCGCAACGT TCAACCTCAT GACATTCCTG
GTCACCTCGG CCGACTCCGG CTCACTGGTG GCGAGCTATC TGACGACGAG CGGGACACGG
GAACCGACGA CGGGTCAGCG TGTCCTGTGG CCGCTCGTCA TCGGCGCGAC CGCGATTGTG
CTCCTGTTCG GCAACGGACT GCGTGCACTC AAGACAGCGG TCATCGCGGC TGGACTGCCG
TTCAGCCTCG TGATCCTCCT CATGGTCTAC TCGCTGACCG TCGGGTTGCG GCGTGACACA
CAGCACGACC GGCCTGGCGA TGCCGACCGC CCCCAGCGAG GCGAGTCCGA CGGACAGGAC
TCGTCGCGGA CTGCCGAGGA CCGATCAGGG GATGAGTAA
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| Protein sequence | MTDDDDETGS PPSPEQRRST HEETRHSRET TVRWFGTEFD PVVLVGSLAI IVVGVVLTVG
FGDQASVAYR ATFAFVNESF GWLYVLAVNV FLVALVAIGL SDYGTIRLGG PDAEPEFSTL
GWVAMLFSSG MGVGLLFFGV AEPISHFVSG GGSFFDVPPN TPEAGRAATA LTMFHWGLHP
WGIYGIVGLA LGYFSYNRGL PLSFRSIFYP LVGERIHGWA GRLIDLAAVV ATVVGLATAT
GLAALQITAG VDFLTTTYLG TALATDVWTA ATIATALIGV TVVSTWLGLE NGIRRLSKLN
VVLMVALLVV VLLVGDTVHL FDVFLEGVGT YLGNFVELSL YTEAFAGEAA GWQHAYTIFY
WGFWTVWSPF VGLFIARISR GRTIREFVGG VLVVPVLFSL GWMAVFNGSA LFVELSVAEG
AISGPLQEHG PAVALFEMFS VYPLAFLTAA IATFNLMTFL VTSADSGSLV ASYLTTSGTR
EPTTGQRVLW PLVIGATAIV LLFGNGLRAL KTAVIAAGLP FSLVILLMVY SLTVGLRRDT
QHDRPGDADR PQRGESDGQD SSRTAEDRSG DE
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