Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Huta_0317 |
Symbol | |
ID | 8382581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhabdus utahensis DSM 12940 |
Kingdom | Archaea |
Replicon accession | NC_013158 |
Strand | - |
Start bp | 304624 |
End bp | 306666 |
Gene Length | 2043 bp |
Protein Length | 680 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644971376 |
Product | bacterio-opsin activator |
Protein accession | YP_003129237 |
Protein GI | 257051404 |
COG category | [R] General function prediction only |
COG ID | [COG3413] Predicted DNA binding protein |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.331726 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAGTT CAGGGGACGG TCGGCGAATA CTCCGGGTTG GGGACGATCC AGGGGCGTCG CCGGTCTCGA CGGACGGGCT CCGGGAGATG GCGGACAACG TCGTCGTCGA ATCGTCGACC GACTTCCGTA CGGCAGTCGA ACGGGTCGAA GCCGACGAGG CAGACTGCGT TGTCGTGGAC CACACCGAGT CGGGATTCGA CGGACTGGCG CTCTTAGAGG CGATCCGTCA GGATCGACCG GGATTGCCGG TCGTCGTCAT CCCGAGCGTT TCGACGGGGG CCATCGCTCG TCGGGCAGTG GCCGCCGATG CGACCGCCTA TGTCCCCCAG ACGAGTGATG ACGCCCTCGG TCTCGTGGTC GAAGCCATCG ACGACGCCGT CCCCGAACCT GATCGTAGGG ACCGACAGGT ACGGATGCCG ATCAGCGACC GCACGGCGAC CGAACAACAG CGCCTGAAAG AGCGTGCCCT CGATGAAGCC CCAGTCGGGA TCACGATCGC GGACGCGACG GCACCCGACA AGCCGCTGAT CTACGTCAAC GACTCCTTCG TGGAGATGAC GGGCTACGAG AAGGAGGACG CGATCGGGGT CAACTGTCGG TTCCTCCAGG GCGAAGGGAC CGACGCCGAG ACGACCCTGG AACTCCGGGA AGCCGTGATG GACGAGCAAG CGGCTGCAGT CGAGTTGCGG AACTACCGTG CCGATGGCTC GACCTTCTGG AACAACCTCG AGATTTCGCC GATCCGGGAC GACGACGGAA CGGTGACTAA CTTCGTGGGG TTCCAGCAGG ATATCACCGA GCGCAAGGAG GCGGAGGCGG CGATCAAACG TGAGCGGGAG ACCTTACGGC GGCTGCTGGA GCGCGTCGAG GGGCTCGTCG GCGACGTGAC TGAGATTCTG GTCAGGGCCG ATTCGCGAGC GGATATCGAC AGAATGACTG TCGAACGGGT CGGGGCCGGC GACGAATTCG ATCGTGCGTG GATCGGGGAG TACGACCCGC CATCCGAGAC GATCACGATC ACCGAAGACA GCCACACGGA CACCGAGTCC GTCACGCTCG ATCTCACTGA CGCGGCGGCC GGATCTGCCA TCGACGTGGT CGCGACGGCC GTGGACCGGG GGGAGGTCCA ACGGTTCGAG GACGCTGACC TGGAATCCCC CGTCGGTGGA GTGGACGGAT CGACGGTTTC GGACGGGGAC GGACTGACTG GTTCTGGAGT GGTGATCCCG CTGGTTTATC GAGAGACGAC CTACGGGGTC CTCGTCGTCT ACGACCGCGA TCCGGACGCC TTCGACGAAA CCGAACGGAC GATACTCGCC GCTCTCGGTC GGGCGATCGG GTCAGCTGTC AACGCCGTCC TGAGCAAGCG GACCGTGACG ACCGATGCCA CCGTCGAAAT CACGGTCTCG TTGCACGGGC CGGATCTCCT TTTGGCTACC CTCGCCGGGC GACTCGATGG TGCCCTCGCG TACCGTGGTG CGCAGGCGAC CGACGACGGG CGGGTGCGGT TTCTGTTCCA TATCGACGCG GACGACGAGG CCAGCCTCCG CGAGGCGGCC GAGCGGGACG AACGGGTTTC TGCCGTGACC GTCCTCTCAC GGACGGACGA CGATTGTGTG ATCGAAATCA CGACCGACGG GACGCCCTTC GTCAGGATCC TGTCCGGATA CGGCGGCGAC ATCCAGGACA TTTCCGTTGA CGACGACGGG ATCGAACTCG CCTTTCAAGT CGCGACCGAA CAGAACGGTC GGGCGATCGT CGAGGAACAC CGGTCGACCT ACGAGACAGC GACGCTGGTC TCCTACACTG AATCCGACGA CCCGGGCGAG ACACCCCAGG CGTTTCGGAG TGCTGTCGAG TCCGAACTGA CCGACCGGCA GTTGACTGCC CTCGAAAAAG CCTACGTGAG CGGGTTCTTC GAGTGGCCAC GTGAGAGCGA GGGTGAGGAA CTCGCCGACT CGATGGGAGT CGTTCCCTCA ACGTATTACC AGCATCTCCG GGCGGCCGAA AAGAAACTCG TCCGGGCTTT TTTCGACTCC TGA
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Protein sequence | MSSSGDGRRI LRVGDDPGAS PVSTDGLREM ADNVVVESST DFRTAVERVE ADEADCVVVD HTESGFDGLA LLEAIRQDRP GLPVVVIPSV STGAIARRAV AADATAYVPQ TSDDALGLVV EAIDDAVPEP DRRDRQVRMP ISDRTATEQQ RLKERALDEA PVGITIADAT APDKPLIYVN DSFVEMTGYE KEDAIGVNCR FLQGEGTDAE TTLELREAVM DEQAAAVELR NYRADGSTFW NNLEISPIRD DDGTVTNFVG FQQDITERKE AEAAIKRERE TLRRLLERVE GLVGDVTEIL VRADSRADID RMTVERVGAG DEFDRAWIGE YDPPSETITI TEDSHTDTES VTLDLTDAAA GSAIDVVATA VDRGEVQRFE DADLESPVGG VDGSTVSDGD GLTGSGVVIP LVYRETTYGV LVVYDRDPDA FDETERTILA ALGRAIGSAV NAVLSKRTVT TDATVEITVS LHGPDLLLAT LAGRLDGALA YRGAQATDDG RVRFLFHIDA DDEASLREAA ERDERVSAVT VLSRTDDDCV IEITTDGTPF VRILSGYGGD IQDISVDDDG IELAFQVATE QNGRAIVEEH RSTYETATLV SYTESDDPGE TPQAFRSAVE SELTDRQLTA LEKAYVSGFF EWPRESEGEE LADSMGVVPS TYYQHLRAAE KKLVRAFFDS
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