Gene Htur_4970 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHtur_4970 
Symbol 
ID8745600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaloterrigena turkmenica DSM 5511 
KingdomArchaea 
Replicon accessionNC_013746 
Strand
Start bp140656 
End bp141741 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content53% 
IMG OID646515430 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003406377 
Protein GI284172996 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.121387 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGGCT GGGAGTCAGG GGCTCTTATT CCAGCGGCTG TAGATACACT CCCGATCAAC 
TTCGCAATCC TTGATGACGA TGGAACAATC CTGTATACAA ATCGTGCCTG GCAGGAGTTC
GGCGAAGCGA ATGATATCGA ACTTCGACCG GATACAATCG GAACCAACTA TCTTACGATC
ACCAGACAAG CGGAAACGGA GACGGCACAA ACTGCTGCCG CCGGGTTATC CGAGATTTTA
ACGGGCGAAC GCAAATTGTT CGAGTTTGAA TATCCGTGTC ACTCTCCCAA CAAACAACGG
TGGTTTCTCA TGCGGGCAGC ATCGTTCACT ACCGGTGATC AGAGATACGT CGCTGTTGCC
CATTTTGATA TCACTGATCG GTACCAGTAT CAGCGTCGGT TGGAAGAGTC CAACGAGCGC
CTCCAGCAGT TCGCCTACGT TGCCTCCCAC GACCTCCGAG AGCCGTTACG AATGGTCACG
AGCTACCTAC AACTGCTTGA GAGTCGGTAT AGTGACGAAC TTGACGAAGA CGCCAAAGAG
TTCATCGAGT TCGCAGTTGA CGGTGCCGAA CGGATGGAGG CAATGATTGA GGGGCTGCTT
ACGTACTCCA GAGTCGAAAC ACAGGGGAAG TCCTTCGAGT CGGTCGATCT CGAGGCAGTG
CTGGACGACG TGTTGACGGA TCTCAGTATC CGGATCGACG AAACCGGTGC TGAAATCACT
GCTGAACCGC TGCCGACTGT CAGCGGTGAC GCCAGCCAAC TCCGTCAACT CTTCCAGAAT
CTGTTAGAAA ACGCCCTCCA GTACAGCGGT GAGCAGGAAC CCCGAGTGAC AATCTCTGCG
ACGCGTGACG AGGACGAGTG GATGATTTCC GTTAGTGACG AGGGGATCGG TATCGATCAA
GAAGATGTAG ACCGGGTGTT CGAGGTATTC CAGCGACTCC ACAGTCACGA GGAGTACAAA
GGAACAGGGA TTGGCCTTGC ACTCTGCCGA CGAATTGTCG AACGCCACGG GGGCGAGATT
TGGGTAGACT CCGAACCCGA AGAAGGATCG ACGTTTTCGT TCACGCTTTC AGCAACCGAT
ACGTGA
 
Protein sequence
MNGWESGALI PAAVDTLPIN FAILDDDGTI LYTNRAWQEF GEANDIELRP DTIGTNYLTI 
TRQAETETAQ TAAAGLSEIL TGERKLFEFE YPCHSPNKQR WFLMRAASFT TGDQRYVAVA
HFDITDRYQY QRRLEESNER LQQFAYVASH DLREPLRMVT SYLQLLESRY SDELDEDAKE
FIEFAVDGAE RMEAMIEGLL TYSRVETQGK SFESVDLEAV LDDVLTDLSI RIDETGAEIT
AEPLPTVSGD ASQLRQLFQN LLENALQYSG EQEPRVTISA TRDEDEWMIS VSDEGIGIDQ
EDVDRVFEVF QRLHSHEEYK GTGIGLALCR RIVERHGGEI WVDSEPEEGS TFSFTLSATD
T