| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Htur_4080 |
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| Symbol | |
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| ID | 8744708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haloterrigena turkmenica DSM 5511 |
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| Kingdom | Archaea |
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| Replicon accession | NC_013744 |
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| Strand | + |
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| Start bp | 332436 |
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| End bp | 335681 |
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| Gene Length | 3246 bp |
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| Protein Length | 1081 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 646514641 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_003405588 |
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| Protein GI | 284167310 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3413] Predicted DNA binding protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTTCGT CCGTACCATC GCCTGCCACG GTCCAAGCGG TCTTCGACCA GCTCGGTCCC
CCTGGGACCC CCTTCACGAC GCCGGAGATC GCCGCGGAGT TCGACTGTTC CGACCGAACG
ATCTACAATC GACTCGACGC GCTCGTCGAC GAGGGCGTCA TTGAGACGAA GAAAGTCGGC
GCTCGCGGAC GGGTGTGGTG GAGGCCCGTC GACGGCGACA TTCGACGGAA CGGCGGCGCT
TTCAACGAAC GGAACCCCGT CTCATTCCGA GATGAGCAGG CACTATCCTT TCTCTCTGAT
AGCGAGATGG CCGAACGCAT CCGCAAGTTC GAGTGGGCCA AAACGCCGCT TGGCCCGATG
GACGGGTGGC CCCTAGAGTT GCGGGTCGCG GCCGACATCA TGCTGGGGGC GGACGAGGCC
ATCGGTCTCT ACTGGGGAGA GGACCTGACA CTGCTGTACA ATGACGCCTG GCGGGAGTTG
ATCGGTGACA AGCATCCGGA GGCGCTGGGG CGGCCTGCCC AAGAGGTGTT TCCCGAGATC
TGGGAGACGA TCGAGCCGAT GTTCGCTGAC GTGCTGGATG GGAATGGAGT TGGGTTCGAA
CGGGAACAGC GACTGTCGCT GGAACGTGAC GGCCAGATAG AGGACGCGTG GTTCGACTAC
AGCGCCAATC CGATTCTGAT GGCCGACGGC TCCGTCGGTG GCGTCTTCAA CATCGCGAAC
GAAATCACCG AGAGAAAAGA CGCCCAACAA ACCCTGCGCG ACAGAGAGGG GCGACTCAAC
GCATTCGTCA CAAGTACCTC GGAAATCGTC TATCGAATGA GTCCGGACTG GTCAGAGATG
TACTACTTGG ACGGCAAGGA TTTCATCGCC GACACGGAGG ATCCTCGGGA AACGTGGTTG
AAGGAGTACA TTCCACCGGA CGAGCAAGAG CGGGTGATGG CCGCCATTGA GGAGGCCATC
GAGACGAAAA GCATGTTCGA ACTGGAGCAC CAGGTTCACC AGGTCGATGG CACCCGAGGC
TGGACGCACT CACGGGCAGT GCCGATACTG GACGACGACG GCGACATCGT CGAGTGGTTC
GGGACGGCCA GTGACGTCAC CGAGCGAAGG CGCGCTGAAC AGGCTCTTCG TGAGTCAGAG
CAACGCTATC AAAGGCTGTT CGACTCCGTC AACGAGTCCA TCGAAGAGGC CTTTTTCATC
ATCGAGCGGG TGTCCGGCGA GGGCGAGACT GCCGCAAACG GGGACGACCC GGCAGCGTAT
CGCTTCGTGG AAACGAACCC GGTGTTCGAG AAATCCATCG GTGTGACCGA CGTAGTCGGG
AAACAAGTGA GCGATCTCGA TTTCGACGGC GACCTCCCCG GATCGGACGT GTGGGGAGAG
GTGGTCCGGA CAGGCGAATC GAGACGCTTC GAGATCGAGA CCACTGGTGG TCCGCTCGCC
GATGGCTGGT ACGATGTTCG CGTCTTCCCG TATGGCGGAG CGGACAGTCG AGCCGCTGCG
TGTCTCGCCG ACGATATCAC AGACCAAAAG GAAGTCCAAC GGTCTCTTGA ACGGCTCACC
GAGGCAAGCC GGGAACTGAT AGAGGCCGAT CCAGAGATGG TCCACGACCG CGTGGCTGAG
CTCACGATAG CGGTGCTTGA CGTCGAGTAC GCTGCGCTCT GGCGGTATGA CGAGGCAAGC
GGAGACTTGA TCGACGCCAT CAGCACTCTC GACACGGGGA TCGATGCCGA AACCGTCCGA
CACCCGGATG ATGCCTCTGA GCACGTCTGG CAGGCGTTTA TCGACGATGA GACCGCCGTC
ACAAACAACC TCCACGTCGA CGAGACCGTG CCGGACGCAG CGACCCTGCG GAGCCGCCTG
CTCATTCCAC TGGGCAGACA TGGCGTTGTC TGTATCGGAT CCTTCCAGCC GAATGGCTTC
GATGAGCGGA TAGTCGACCT TGCCGAAACT CTCGGGGCGA CGCTCGAAAC GGCGTGGGAC
CGTGCCGACA GCGAACGCCA ATTGCAAGTG CAGAACGAAG AACTGCAACG CCTCGACCGT
CTCAACACCC TCATACGAGA GATCGATCAG GCACTTGTGG GAGCCGATAC CCGCGAGGAG
ATCGATGAGG CAGTCTGCGA ACGACTGGCC AGCTCCGACC TCTACGAGTT CGCGTGGCTC
GGAGAGTACG ATCCGGGGAC CAACCGGATA GAACCGCGTG CGTGGGCTGG CGTCGACAGC
GGCTACGTAG AGGAGCTCAC GATCACGGTC GAGGACACAC CGACCAACCG AGACCCAATC
GCCCGTGCCC TCCGCACGGG CGACTTGCAG GTGGTTGCAG ACATCGCTAC GGATAGCGGC
TTCGCCCCCT GGCGGGAAGC GACGCTCGAA CGCGGCGCCC GGTCGCTGGT CTGCATTCCA
CTCGTTTACG ACGACGCGGC GTACGGCGTG TTGACAGTCT ACGCCGACCG TCCCCAGTCC
GACGAGGACA AACGGAATCG GGACGTGCTG TCGGAACTCG GTGATACGAC CGCCCATGCG
CTCAACGCGA GGGAGACGCG GGCGACGTTG CAGACCGACA GCGTCGTCGA ACTCACGCTC
CGATTCGAGG ACGCTGACAC GCCGCTGTAT CGTCTCTCCC GGGAGACGGA GTATACCATC
GAGCATCAGG GGTTCGTTCC CCGATCGAGC GGGCAGACCG ACGTCTTCTT CATCGTTCGT
GAAATCTCGC CGGAAGATCT CCGGGCCACA GCAGAACGCT CGCTCGCGTT CGAGGACCTA
GACTGTCTCA CCGAGAGGGC CGATGGAGCA CTGTTCAGGG CACGGGTGTC TGAGCCGACG
CTCGCCGCAC GGGTCACTGA CGAGGGGGCT GTCGTGCGTT CGATTACCAT CGATTCCGGG
GTTGCAACCG TTGTTCTCGA TATCCCCCAC ACGGCAGCGG TCCGCGAGTT CCTGAACCGA
CTCCGCCAGT GGCATCCGGA ATTGGAGCTA CGCGCCCGCC AGTCGCGCGA ACGGCCACTG
AAGACCCGGC AAACCTTCGT GACGGCGCTC GAGGACCGCC TGACGGATCG ACAGCGGGAA
GTCCTGCAGA CGGCCTACCT GAGCGGCTTC TTCGAGATGC CACGGGTCAG TAACGGACAG
GAGGTCACAC ACCTGGTCGG CGTCTCACAG CCGACGTTCT CTGAGCACCT GCGTGCCGCT
GAACGTACCC TGTGTGAGGT CCTATTCGAG ACCGAACCGT ATGCCGAGGA TATCGTCTCG
ACGTAG
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| Protein sequence | MGSSVPSPAT VQAVFDQLGP PGTPFTTPEI AAEFDCSDRT IYNRLDALVD EGVIETKKVG
ARGRVWWRPV DGDIRRNGGA FNERNPVSFR DEQALSFLSD SEMAERIRKF EWAKTPLGPM
DGWPLELRVA ADIMLGADEA IGLYWGEDLT LLYNDAWREL IGDKHPEALG RPAQEVFPEI
WETIEPMFAD VLDGNGVGFE REQRLSLERD GQIEDAWFDY SANPILMADG SVGGVFNIAN
EITERKDAQQ TLRDREGRLN AFVTSTSEIV YRMSPDWSEM YYLDGKDFIA DTEDPRETWL
KEYIPPDEQE RVMAAIEEAI ETKSMFELEH QVHQVDGTRG WTHSRAVPIL DDDGDIVEWF
GTASDVTERR RAEQALRESE QRYQRLFDSV NESIEEAFFI IERVSGEGET AANGDDPAAY
RFVETNPVFE KSIGVTDVVG KQVSDLDFDG DLPGSDVWGE VVRTGESRRF EIETTGGPLA
DGWYDVRVFP YGGADSRAAA CLADDITDQK EVQRSLERLT EASRELIEAD PEMVHDRVAE
LTIAVLDVEY AALWRYDEAS GDLIDAISTL DTGIDAETVR HPDDASEHVW QAFIDDETAV
TNNLHVDETV PDAATLRSRL LIPLGRHGVV CIGSFQPNGF DERIVDLAET LGATLETAWD
RADSERQLQV QNEELQRLDR LNTLIREIDQ ALVGADTREE IDEAVCERLA SSDLYEFAWL
GEYDPGTNRI EPRAWAGVDS GYVEELTITV EDTPTNRDPI ARALRTGDLQ VVADIATDSG
FAPWREATLE RGARSLVCIP LVYDDAAYGV LTVYADRPQS DEDKRNRDVL SELGDTTAHA
LNARETRATL QTDSVVELTL RFEDADTPLY RLSRETEYTI EHQGFVPRSS GQTDVFFIVR
EISPEDLRAT AERSLAFEDL DCLTERADGA LFRARVSEPT LAARVTDEGA VVRSITIDSG
VATVVLDIPH TAAVREFLNR LRQWHPELEL RARQSRERPL KTRQTFVTAL EDRLTDRQRE
VLQTAYLSGF FEMPRVSNGQ EVTHLVGVSQ PTFSEHLRAA ERTLCEVLFE TEPYAEDIVS
T
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