| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_11540 |
|---|
| Symbol | |
|---|
| ID | 7312899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | + |
|---|
| Start bp | 1245575 |
|---|
| End bp | 1247158 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643611592 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_002508901 |
|---|
| Protein GI | 220931993 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.00507142 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAAG TACTGGTAAG TGATAATATA TCTCCCAAGG GAATAGAAAT TCTTGAACAG
GAAGCAGATG TTACCTTTAA TCCCGATCTT TCGCGGGAAG AATTCCTTGA TATAATTGGT
GAATATGATG GATTAATAGT TAGAAGTATG ACTGAAGTTG ATAAAGAGGC CCTGGATAAG
GCCAGAAACT TAAAGGTAAT CGGAAGAGCA GGTACGGGTT ATGACAACAT TGATATTGAA
GAAGCGAGCA AAAGAGGAAT AATAGTTTTC AATACCCCAA CCGGAAATAC TATTTCTGCA
GTGGAACACA CTATCGGAAT GATGCTGGCC TTATCAAGGA ACATACCACA GGCAAATCAA
GCCCTTCATG AGGGGATCTG GGACAGAAAA AAATACATGG GGGTTGAAGT TAAAGGAAAA
ACCCTCGGAA TTATTGGACT GGGAAGGATC GGTAGTCGGG TTGCTGTTCG AGCCCAGGCC
TTTGGTATGA AGGTTATTGC CAATGACCCT TATCTACCAC CAGAGAAAGC AGCTAAAATA
AATGTACCCC TGCTCGGATT TAAGGAAGTA TTAAAAAAAT CTGATTATAT AACACTCCAT
ACCCCACTAA CTGATGAAAC ATACCATATA TTAAGCCATA AAGAATTTGC CATTATGAAA
GATAATGTAA GAATTATAAA TTGTGCCCGG GGTAAAAACG TAGATACACA AGCCCTGGCA
AAGGCCCTTG CAGAACACAA GGTAGCCGGG GCTGCTATCG ATGTTCATGA AGTAGAACCA
TTACCTGAAG ATAATCCTTT ACTGAAATAT CAAGACAGGG TTATTATGAC CTGCCACCTT
GGTGGTACAA CTACAGAAGC CATGGATAAT GTCTCTATAG CAGCTGCCGA ACAGGTTCTT
GATGTCCTGA ATAATGGTCT ACCTGAATCC CCGCTAAATA TTCCTTCTAT AAACATTCAG
GAATACAATA AAGCCAAACC CTATTTGAAT CTTGTAAATA AACTGGGAAA CTTTATAGCA
AAATGGAAAG GACATGAACG CATTGAGATG ATTGAAGCTG AATATGGTGG AGAAGTTATT
GGTCATGACC TGAAACCATT TACAACAAGT CTTATTAAAG ATATCCTTGA TCCTATCCTG
GATAGCCGTG TTAACCTGGT AAATGCTCAG CTGGTTGCTA AAGAACGTGG TATAGAAATT
AAAGAAAGCC AGATTAGCAA ACCGGACGGG GTTAATAACA TAATAAGGGT CAGGGTAAAA
ACAAATAAGG GTAATTATAG TGTGGCTGGA ACTAATTTGC CCATTGGGTT AAGGATTATA
GAAATTAATG ATTTTCGGAT TGACCTTAAC CTTGAGGGTA AATTCCTGGT TATCTCCTAC
CAGGATAAAC CGGGGGTAAT TGGTAAGGTA GGTAGCATTT TAGGTCAGGA TAATGTGAAC
ATTGCCAGTA TGCAGGTTGG AAGAAAATCA TATGGTGGGC AGGCCATAAT GATAATACAG
ACCGATAATA AACCTTCAAA AGCAACTATG GAAAAAATAA ATAAAAATAT AGAGTTAACA
GATTTAACAT ATCTGGAAAT ATAA
|
|---|
| Protein sequence | MYKVLVSDNI SPKGIEILEQ EADVTFNPDL SREEFLDIIG EYDGLIVRSM TEVDKEALDK
ARNLKVIGRA GTGYDNIDIE EASKRGIIVF NTPTGNTISA VEHTIGMMLA LSRNIPQANQ
ALHEGIWDRK KYMGVEVKGK TLGIIGLGRI GSRVAVRAQA FGMKVIANDP YLPPEKAAKI
NVPLLGFKEV LKKSDYITLH TPLTDETYHI LSHKEFAIMK DNVRIINCAR GKNVDTQALA
KALAEHKVAG AAIDVHEVEP LPEDNPLLKY QDRVIMTCHL GGTTTEAMDN VSIAAAEQVL
DVLNNGLPES PLNIPSINIQ EYNKAKPYLN LVNKLGNFIA KWKGHERIEM IEAEYGGEVI
GHDLKPFTTS LIKDILDPIL DSRVNLVNAQ LVAKERGIEI KESQISKPDG VNNIIRVRVK
TNKGNYSVAG TNLPIGLRII EINDFRIDLN LEGKFLVISY QDKPGVIGKV GSILGQDNVN
IASMQVGRKS YGGQAIMIIQ TDNKPSKATM EKINKNIELT DLTYLEI
|
|---|
| |