Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hore_05990 |
Symbol | |
ID | 7314504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothermothrix orenii H 168 |
Kingdom | Bacteria |
Replicon accession | NC_011899 |
Strand | + |
Start bp | 651872 |
End bp | 653077 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643611029 |
Product | Tfp pilus biogenesis protein PilC |
Protein accession | YP_002508351 |
Protein GI | 220931443 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
Num covering plasmid clones | 54 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACCGG AGTTTGAATA TGAAGCGGTA AGTAAAAGTG GAGAACGAAT TAAAGGTACT ATTACAGCTG ATAACTCGAC AGTGGTTGCC AGGCAGCTCC GGGAAGAGGG CTATTATATA ACTTCAATTG AAGAACAGGT AGAGAGAAAA GAAATTAATA TTCAACTCAG TAACAGGGTT AAAACAAAGG ACCTGGTATT GTTTACCCAG CAGTTTTCAG TATTGCTCAA TGCCGGTATT TCTCTGGTTG AAGCCCTGGA TATTATGTAT GACCAGGTTG AACACCCCCG TTTGAAGGAG GTTGTTCGCT CCATACAGGA GGATGTGGAA ACAGGTTCTT CCCTGACCGA TGCCCTTTTA AAACACCCTG ATGTGTTTCC GGAATTATAC TGTCAGATGG TTAAAGCCGG TGAAGCCGGT GGTGTGCTTG ACCAGGTCCT GGAACAATTA AGTGCCCATT ATGAGAGGCA GGATGAAATT AATAGCAAGG TTAAGTCAGC CATGTATTAT CCGGTGATTT TACTGGTGGT AGCGGTTGGT GTCGTTATTT TTCTCATGAC CCGGGTTGTT CCCCAGTTTA TCAGTCTCTT TTCATCTATG GACGTTGAGC TGCCATTACC GACCAGGATA TTAATTAAAT TAAGTACCTT TTTATCCTCA TACTGGTGGG CCCTGTTTGG GGGGCTGGGA TTGACTGTAG CCCTTTTATT AAAATATAAA AGTACTCCCG AGGGAAGACG CCGGTTTGAT AGTTTAATTC TCAAGATCCC TGTGTTCGGT AAGTTAATGC GGAAAATATA TGTATCCCGT TTTACCAATA CCCTGTCTAT CCTGTTAACA AGTGGGATAG ACATTATATC AGCCCTTGCT ATTGTCGAAG AGGTGGTGGG AAATAAGGTT TTTTCAGATG TGATTTCCCG CTCCCGCACC CAGGTAAGTG AAGGGATATC CCTTTCCCGG CCTCTTGATG AGAGTGGGGA GTTTCCCCGG ATGGTTATTC AGATGATCAA TGTTGGCGAG GAAGCAGGTT CCCTGGATAA TATGCTGCAG AAGGTTTCAG ATTTTTATGA TAAAGAAGTG GAAACCAGTA TCAACAATAC TGTTTCCCTT ATTGAACCCC TTATGATAGT GGTTCTGGCG GTTATCGTTG GGTTTATTGT AATGTCCATT ATATTACCCA TGTTTGAAAT GTATGAACAA TTTTAG
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Protein sequence | MAPEFEYEAV SKSGERIKGT ITADNSTVVA RQLREEGYYI TSIEEQVERK EINIQLSNRV KTKDLVLFTQ QFSVLLNAGI SLVEALDIMY DQVEHPRLKE VVRSIQEDVE TGSSLTDALL KHPDVFPELY CQMVKAGEAG GVLDQVLEQL SAHYERQDEI NSKVKSAMYY PVILLVVAVG VVIFLMTRVV PQFISLFSSM DVELPLPTRI LIKLSTFLSS YWWALFGGLG LTVALLLKYK STPEGRRRFD SLILKIPVFG KLMRKIYVSR FTNTLSILLT SGIDIISALA IVEEVVGNKV FSDVISRSRT QVSEGISLSR PLDESGEFPR MVIQMINVGE EAGSLDNMLQ KVSDFYDKEV ETSINNTVSL IEPLMIVVLA VIVGFIVMSI ILPMFEMYEQ F
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