Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hore_05960 |
Symbol | |
ID | 7314501 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothermothrix orenii H 168 |
Kingdom | Bacteria |
Replicon accession | NC_011899 |
Strand | + |
Start bp | 647961 |
End bp | 648830 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643611026 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_002508348 |
Protein GI | 220931440 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 50 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTGATA ATAGTACACA GGTGGTTGGA TTGATGGGAT ACCCCCTGGG TCATTCAATG TCCCCGGCCA TGCATAACCG GGCCTATAAA GACCTTGGGA TTAATTATGT TTATCTTCCG CTGGAAATAA AGCCTGACTT TCTCAAAGAA GGGATAGAGG GATTAAGAGC ATTTAATTTC CGGGGGGTTA ATGTGACCAT ACCCTATAAG GAAAAAGTTA TCCCCTATCT GGATGAAATT GATAGGCTGG CCGGGGAAAT CGGGGCTGTC AATACAATAG TTAATAATGG TGGAAAATTA AAGGGTTATA ATACTGACGC CCTGGGCTTT AAAAAAATGC TTGAAGATGA CTGTAGTTTT GAAATTAAGG GAACAAAAGC GGTAATTATC GGAGCAGGAG GGGCCAGCCG GGCAGTCGGG GCAGTCCTGG CCAGGGAAGG GGCCAGTGAA ATCTTTCTCT TAAACAGAAC CCTGAAAAAA GCAGCAAAAC TGGTCGGTAT CTGGAATAAG ACTTATCCCG GTATAAAAAC TGTTGCTCTA CCTTTAGATG AAGATAAATA TCTACCTGTT GTTAAAAGAT GTGATGTAAT CATTGATACA ACACCGGTGG GCATGGCTCC TGGTATTAAA GGAGGGCCTG TAATTGCTAA AGAAGCTATA ACCAGGGATA CTCTTGTAGT CGATCTGGTA TATAATCCAC CTGAAACTAC ATTAATAAAA GCCGGAAGGC AGGTCGGGGC CAGAACTATG AATGGTTTTC CTATGCTTAT TTATCAGGCG GCTTATGCAT TTAAACTGTG GACGGGGATA AAACCTGAAC TATTTATAAA ACCGGTCCGG GAGGCAATTT CACCAGATTT TTTTGCATAA
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Protein sequence | MFDNSTQVVG LMGYPLGHSM SPAMHNRAYK DLGINYVYLP LEIKPDFLKE GIEGLRAFNF RGVNVTIPYK EKVIPYLDEI DRLAGEIGAV NTIVNNGGKL KGYNTDALGF KKMLEDDCSF EIKGTKAVII GAGGASRAVG AVLAREGASE IFLLNRTLKK AAKLVGIWNK TYPGIKTVAL PLDEDKYLPV VKRCDVIIDT TPVGMAPGIK GGPVIAKEAI TRDTLVVDLV YNPPETTLIK AGRQVGARTM NGFPMLIYQA AYAFKLWTGI KPELFIKPVR EAISPDFFA
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