| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5540 |
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| Symbol | |
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| ID | 8547953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 7600793 |
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| End bp | 7601188 |
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| Gene Length | 396 bp |
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| Protein Length | 131 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 646390213 |
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| Product | endoribonuclease L-PSP |
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| Protein accession | YP_003269916 |
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| Protein GI | 262198707 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
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| TIGRFAM ID | [TIGR00004] endoribonuclease L-PSP, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00356179 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCACTT CGCGCACCGT CATCCGCACC GACAAAGCCC CCAGCGCCAT CGGCCCGTAC
TCGCAGGCCG TGCGCGCCGG CAACCTGCTG TTCTGCTCGG GTCAGGTCGC CCTCGACCCG
GCCACGGGCG AGATGGTGGC GCCCGACGAT GTCGGCGCCC AGACCCGCCG CGCTCTCGAT
AACCTGGGCG CGGTGCTCGA GGCCGGCGGC GCGTCGTTCG CCTCGATCGT CAAGACCACC
ATCTTCCTCG CCGATATGAA CGACTTCGCG CTGGTCAACG GCATCTACGC CGAGCGCTTT
CCCGCGGAGC CGCCCGCGCG CGCGACGGTC GAGGTCTCGC GCCTGCCCAA GGATGCGCGG
GTCGAGATCG ACGCGATCGC GCTCGTGAAC GACTGA
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| Protein sequence | MSTSRTVIRT DKAPSAIGPY SQAVRAGNLL FCSGQVALDP ATGEMVAPDD VGAQTRRALD
NLGAVLEAGG ASFASIVKTT IFLADMNDFA LVNGIYAERF PAEPPARATV EVSRLPKDAR
VEIDAIALVN D
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