Gene Hoch_5294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_5294 
Symbol 
ID8547706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp7279989 
End bp7283492 
Gene Length3504 bp 
Protein Length1167 aa 
Translation table11 
GC content69% 
IMG OID646389968 
Productpeptidase S41 
Protein accessionYP_003269672 
Protein GI262198463 
COG category[S] Function unknown 
COG ID[COG4946] Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACGGA AGAAGCTGTT TCACCTGTGG GCGGCCGCTG CGCCGTCAGA GCGCACGCGC 
GGCACAGCCC GCGCGCGAGG AGGCGCGGGG ACGCTGTTGG CGCTGGCGGC GCTGGGCGCG
TCCGCCTGCG GCGGCATGCC CCCGTCCATG GCGCCGCCGG CCACGGCCGG TAGCACGGCG
GCCGATGTAC CGCCCGCCGT GCCCCTGCCG GGTTCCGAGG TCGTCGACGC CGAGCGCGCG
ACCAAGCTCA TGCGCTATCC CGATGTCCAC GAAGACCTGG TGGTATTCAC CTACGCGGGC
GATCTGTGGT TGGCGCGCAC CAGCGGCGGC ACCGCGGCCC GGCTCACGGC TCACCCCGGC
CTGGAGCTGT TTCCCAAGTT CTCGCCCGAT GGCCAGTGGA TCGCGTTCAC CGGTCAATAC
GGCGGTGACG AGCAGGTGTA CGTGATCTCG GTCGGCGGCG GCACGCCGCG CCAGCTCACC
TATTACCCGG CGCGCGGTCC GCTGCCGGCG CGCTGGGGCT ACGACAATCA GGTCTACGGC
TGGACACCGG ACGGCACCCA GGTGCTGTTT CGCTCGCTGC GCGACAGCTA CGACGTCGGC
AGCTCGCGCC TGTACACGGC GGCCGTGAGC GGCGGCATGC CGTCGCCCCT GCCCATGCCC
GAGGCCGGCG CGGGCGCGCT CTCGCCCGAC GGCAAGCGCG TGGTGTATTC GCCGTTGTTT
CGCGATTTCC GCACCTGGAA GCGCTACGCT GGCGGCTGGG CCCAGGACCT CTACGTCTTC
GACATCGACA ACACCTCGGT TCAGCGCATC ACCGACGATC CGCGCGTGGA TCGCGATCCC
ATGTGGATCG GCGACAGCGT GTATTTCGCC TCCGAGCGCA CCGGCGTTAG CAATCTGTTC
CGCTACGACT TCGAAACCGG CAGCGCCGAG CAGCTCACCA CGCACACCGA TTGGGACGTG
CGCTGGCCGA GCGCCGACGC CAGCGGCTCC ATCGTCTACG AGCTCGAGGG CGACCTCTAC
CTGTTCGATG CCGGTACCCG CGAAGAGCGC AAACTGTCCA TCTACGTGCC CGATGACGGC
CTCAGCCGCC AGAGCGAGTG GGTGAGCGCG GGCCAGCACA TCGAGTCCTT CTCGCTCAGC
CCCGACGGCA AGCGGGCGCT GTTCGTGGGC CGCGGTGACC TGTTCACGGT TCCCGTCGAG
CACGGCCTTG TGCGCAACCT CAGCCACACG CCCAACGCCC ACGAGCGCGA GGCGAGCTGG
ATGCCCGACG GCTCGCACGT GGTCTACGTG TCCGACTGGA GCGGCGAGGA GGAGCTGTGG
GTGGTCGATC AGCGCGGCCA GTCGCCAGCG CGCCAGCTCA CCAAGGGCAA TGGCGGACGC
CTGTACGAGC CGCGCTTCTC GCCCGACGGG CGCCACGTCG CGTACAGCGA TCACCGCGGC
CGCATCTTCG TGATCCCGGC CGCCGGTGGC CAGCCCCTGG AGGTCGCCGA CGAGCCATTC
GGACGCGCGG ACGATTACCG CTGGTCGCCC GATGGTCAGT TCTTGGCCTT CAGCCTGAGT
GACGACACCG GGCTCAGCTC GATCTACATC TGGGGGATGC GCGACCGGCG CCTGCGCCGC
ATCACGGGGC CCGAGTTCGA CGAGGGCTCG CCGGTGTGGC ACCCCGGCGG CGAGCACATC
TTCTTTCTCA GCCGCCGCGA GTTTCAGCCG CAGATCGGCC AGCTCGAGTG GAACTACGTC
GCCAACCGCG GCACCATGGT GCTCGGCTTG GCCCTGCATC CGGGCGCGCC CAACCTGTTT
GGCCCGCGCA ACGACGAGGT CGGTGAGGGC GAGGAGGAGG AGGATGAGCA GAAGCAGCCG
GGCAAGCTCG GCGGCGGGCG CAAAAACTTC AGCCGCCGCG TGCGCGTGGA CTTCGAGGGC
CTGGCCGAGC GCGTGATCCG GGCGCCGATT CCGGCCGACA ACTACGCCGG CCTGGCGGTC
ACCGAGAGCC ACCTGCTGTT CGTCAAGCAG GAGGCCTTTT TCTACGGCCG CGAGCCCATG
GTGAAGCCGA TGCTTCAGGC CTATGGCTTC AAGGATCGCA AGGTCATCGA CATGGTGTCC
GAGGTCGCCG GCTACTCGCT GTCCGACGAC GGCAAGCTGG TGCTGGTCCA GCAGGGCAAG
GGCTACAAGG TCTATCCCGT GGGCAAGCCG GGCGCCGAGG CCGGAGAGGC GGTCAAGCCG
GTGGCCGTGG ATGGGCTCAA GCTGCGGCGC GTCCCCAGCC TCGAGTGGCA GGTGGTGTTC
GCCGAGGTCT GGCGGCGTTT CCGCGACTTC TTCTACGTCG AGAATATGCA CGGCTACGAC
TGGCAGGCGC TGCGCGCCAA GTACGAGCCG CTGCTGCGCC ACGTGTCGCA CCGCTCGGAC
CTCAACTACC TGATCGGCGA GATGATCGCC GAGCTCAACG TCTCCCACGC CTACATCGCG
GGCGGCGACG AGAAGCTGCC CGCGCGCCAG CACGTGGCGC TGCTGGGAGC CCGTCTGGAG
CTCGACCCCG GCGCCGGCCG CTACCGCGTG ACCCGCATCC TCCCCGGACA GAACTCCGAA
AAACGCTACC GCTCGCCGCT CACCGAAGTC GGCGTGCGCG TGGCCGAGGG CGACTACATC
CTCGGCATCA ACGGCGAGAA CCTCGACGCC TCGGAGAACC CCTACCGCCT GCTCCAGCTC
CCGGCCGGAC AGCCGGTCGA GTTGCTCGTC AACCGGGCGC CGACGCCGGC CGGCGCGCGC
ACCGTGCTGG TCGAGCCTCT GTCCACCGAG ACCGATCTCA TCTATCTCGG CTGGGTGACC
GAAAACATGC GCCGGGTGTC CGAGGCCACC GAGGGCCGGG TCGGCTACCT GCACATCCCG
GACATGGGCC CCGACGGCAT TCGCGAGTTC ATCAAGTGGT ATTACGGCCA GGTGCGCAAA
GAGGGCCTGA TCGTCGATGT CCGCGGCAAC GGCGGCGGCA ACGTCTCGCA GATGATCATC
GAACGCCTGA GCCGCACCCT GCGCAGCGTC GACTTCGCGC GCAACGCCGA CCACCTCTTC
ACCTACCCGG CCGTGGTCTT TCACGGACAC ATGGTCGCGT TGATCAACGA GACCTCGGCC
TCGGACGGCG ACATCTTCCC GTGGATGTTC CGCGAATCCG GGCTGGGGCC CCTGATCGGT
AAGCGCACCT GGGGCGGCAT CGTCGGCATC TCGTTCCACG GCCCGCTCAT CGACGGCGGC
AGCGTCTTCG TCCCCGAGTT CGGCAACGCC TCGGCCGACG GCCAGTGGGT CATCGAGGGC
GTGGGCGTGA CCCCGGACAT CGAGGTCGAA AACGATCCCG TGTCGGTGAT TCAGGGCCGC
GATCCGCAGC TCGAGCGCGG TATCGAAGAG GTAATGAAGC GCATCGCGGC CGAGCCCCGC
AGCCTGCCCG GCCGCCCGGC GCCGCCGGTC AAGACCATCG AGATGCTCGA GAAGGACGCG
GCCGAGGCGC CGCCCGAGAG CTGA
 
Protein sequence
MTRKKLFHLW AAAAPSERTR GTARARGGAG TLLALAALGA SACGGMPPSM APPATAGSTA 
ADVPPAVPLP GSEVVDAERA TKLMRYPDVH EDLVVFTYAG DLWLARTSGG TAARLTAHPG
LELFPKFSPD GQWIAFTGQY GGDEQVYVIS VGGGTPRQLT YYPARGPLPA RWGYDNQVYG
WTPDGTQVLF RSLRDSYDVG SSRLYTAAVS GGMPSPLPMP EAGAGALSPD GKRVVYSPLF
RDFRTWKRYA GGWAQDLYVF DIDNTSVQRI TDDPRVDRDP MWIGDSVYFA SERTGVSNLF
RYDFETGSAE QLTTHTDWDV RWPSADASGS IVYELEGDLY LFDAGTREER KLSIYVPDDG
LSRQSEWVSA GQHIESFSLS PDGKRALFVG RGDLFTVPVE HGLVRNLSHT PNAHEREASW
MPDGSHVVYV SDWSGEEELW VVDQRGQSPA RQLTKGNGGR LYEPRFSPDG RHVAYSDHRG
RIFVIPAAGG QPLEVADEPF GRADDYRWSP DGQFLAFSLS DDTGLSSIYI WGMRDRRLRR
ITGPEFDEGS PVWHPGGEHI FFLSRREFQP QIGQLEWNYV ANRGTMVLGL ALHPGAPNLF
GPRNDEVGEG EEEEDEQKQP GKLGGGRKNF SRRVRVDFEG LAERVIRAPI PADNYAGLAV
TESHLLFVKQ EAFFYGREPM VKPMLQAYGF KDRKVIDMVS EVAGYSLSDD GKLVLVQQGK
GYKVYPVGKP GAEAGEAVKP VAVDGLKLRR VPSLEWQVVF AEVWRRFRDF FYVENMHGYD
WQALRAKYEP LLRHVSHRSD LNYLIGEMIA ELNVSHAYIA GGDEKLPARQ HVALLGARLE
LDPGAGRYRV TRILPGQNSE KRYRSPLTEV GVRVAEGDYI LGINGENLDA SENPYRLLQL
PAGQPVELLV NRAPTPAGAR TVLVEPLSTE TDLIYLGWVT ENMRRVSEAT EGRVGYLHIP
DMGPDGIREF IKWYYGQVRK EGLIVDVRGN GGGNVSQMII ERLSRTLRSV DFARNADHLF
TYPAVVFHGH MVALINETSA SDGDIFPWMF RESGLGPLIG KRTWGGIVGI SFHGPLIDGG
SVFVPEFGNA SADGQWVIEG VGVTPDIEVE NDPVSVIQGR DPQLERGIEE VMKRIAAEPR
SLPGRPAPPV KTIEMLEKDA AEAPPES