Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_5294 |
Symbol | |
ID | 8547706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 7279989 |
End bp | 7283492 |
Gene Length | 3504 bp |
Protein Length | 1167 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 646389968 |
Product | peptidase S41 |
Protein accession | YP_003269672 |
Protein GI | 262198463 |
COG category | [S] Function unknown |
COG ID | [COG4946] Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACGGA AGAAGCTGTT TCACCTGTGG GCGGCCGCTG CGCCGTCAGA GCGCACGCGC GGCACAGCCC GCGCGCGAGG AGGCGCGGGG ACGCTGTTGG CGCTGGCGGC GCTGGGCGCG TCCGCCTGCG GCGGCATGCC CCCGTCCATG GCGCCGCCGG CCACGGCCGG TAGCACGGCG GCCGATGTAC CGCCCGCCGT GCCCCTGCCG GGTTCCGAGG TCGTCGACGC CGAGCGCGCG ACCAAGCTCA TGCGCTATCC CGATGTCCAC GAAGACCTGG TGGTATTCAC CTACGCGGGC GATCTGTGGT TGGCGCGCAC CAGCGGCGGC ACCGCGGCCC GGCTCACGGC TCACCCCGGC CTGGAGCTGT TTCCCAAGTT CTCGCCCGAT GGCCAGTGGA TCGCGTTCAC CGGTCAATAC GGCGGTGACG AGCAGGTGTA CGTGATCTCG GTCGGCGGCG GCACGCCGCG CCAGCTCACC TATTACCCGG CGCGCGGTCC GCTGCCGGCG CGCTGGGGCT ACGACAATCA GGTCTACGGC TGGACACCGG ACGGCACCCA GGTGCTGTTT CGCTCGCTGC GCGACAGCTA CGACGTCGGC AGCTCGCGCC TGTACACGGC GGCCGTGAGC GGCGGCATGC CGTCGCCCCT GCCCATGCCC GAGGCCGGCG CGGGCGCGCT CTCGCCCGAC GGCAAGCGCG TGGTGTATTC GCCGTTGTTT CGCGATTTCC GCACCTGGAA GCGCTACGCT GGCGGCTGGG CCCAGGACCT CTACGTCTTC GACATCGACA ACACCTCGGT TCAGCGCATC ACCGACGATC CGCGCGTGGA TCGCGATCCC ATGTGGATCG GCGACAGCGT GTATTTCGCC TCCGAGCGCA CCGGCGTTAG CAATCTGTTC CGCTACGACT TCGAAACCGG CAGCGCCGAG CAGCTCACCA CGCACACCGA TTGGGACGTG CGCTGGCCGA GCGCCGACGC CAGCGGCTCC ATCGTCTACG AGCTCGAGGG CGACCTCTAC CTGTTCGATG CCGGTACCCG CGAAGAGCGC AAACTGTCCA TCTACGTGCC CGATGACGGC CTCAGCCGCC AGAGCGAGTG GGTGAGCGCG GGCCAGCACA TCGAGTCCTT CTCGCTCAGC CCCGACGGCA AGCGGGCGCT GTTCGTGGGC CGCGGTGACC TGTTCACGGT TCCCGTCGAG CACGGCCTTG TGCGCAACCT CAGCCACACG CCCAACGCCC ACGAGCGCGA GGCGAGCTGG ATGCCCGACG GCTCGCACGT GGTCTACGTG TCCGACTGGA GCGGCGAGGA GGAGCTGTGG GTGGTCGATC AGCGCGGCCA GTCGCCAGCG CGCCAGCTCA CCAAGGGCAA TGGCGGACGC CTGTACGAGC CGCGCTTCTC GCCCGACGGG CGCCACGTCG CGTACAGCGA TCACCGCGGC CGCATCTTCG TGATCCCGGC CGCCGGTGGC CAGCCCCTGG AGGTCGCCGA CGAGCCATTC GGACGCGCGG ACGATTACCG CTGGTCGCCC GATGGTCAGT TCTTGGCCTT CAGCCTGAGT GACGACACCG GGCTCAGCTC GATCTACATC TGGGGGATGC GCGACCGGCG CCTGCGCCGC ATCACGGGGC CCGAGTTCGA CGAGGGCTCG CCGGTGTGGC ACCCCGGCGG CGAGCACATC TTCTTTCTCA GCCGCCGCGA GTTTCAGCCG CAGATCGGCC AGCTCGAGTG GAACTACGTC GCCAACCGCG GCACCATGGT GCTCGGCTTG GCCCTGCATC CGGGCGCGCC CAACCTGTTT GGCCCGCGCA ACGACGAGGT CGGTGAGGGC GAGGAGGAGG AGGATGAGCA GAAGCAGCCG GGCAAGCTCG GCGGCGGGCG CAAAAACTTC AGCCGCCGCG TGCGCGTGGA CTTCGAGGGC CTGGCCGAGC GCGTGATCCG GGCGCCGATT CCGGCCGACA ACTACGCCGG CCTGGCGGTC ACCGAGAGCC ACCTGCTGTT CGTCAAGCAG GAGGCCTTTT TCTACGGCCG CGAGCCCATG GTGAAGCCGA TGCTTCAGGC CTATGGCTTC AAGGATCGCA AGGTCATCGA CATGGTGTCC GAGGTCGCCG GCTACTCGCT GTCCGACGAC GGCAAGCTGG TGCTGGTCCA GCAGGGCAAG GGCTACAAGG TCTATCCCGT GGGCAAGCCG GGCGCCGAGG CCGGAGAGGC GGTCAAGCCG GTGGCCGTGG ATGGGCTCAA GCTGCGGCGC GTCCCCAGCC TCGAGTGGCA GGTGGTGTTC GCCGAGGTCT GGCGGCGTTT CCGCGACTTC TTCTACGTCG AGAATATGCA CGGCTACGAC TGGCAGGCGC TGCGCGCCAA GTACGAGCCG CTGCTGCGCC ACGTGTCGCA CCGCTCGGAC CTCAACTACC TGATCGGCGA GATGATCGCC GAGCTCAACG TCTCCCACGC CTACATCGCG GGCGGCGACG AGAAGCTGCC CGCGCGCCAG CACGTGGCGC TGCTGGGAGC CCGTCTGGAG CTCGACCCCG GCGCCGGCCG CTACCGCGTG ACCCGCATCC TCCCCGGACA GAACTCCGAA AAACGCTACC GCTCGCCGCT CACCGAAGTC GGCGTGCGCG TGGCCGAGGG CGACTACATC CTCGGCATCA ACGGCGAGAA CCTCGACGCC TCGGAGAACC CCTACCGCCT GCTCCAGCTC CCGGCCGGAC AGCCGGTCGA GTTGCTCGTC AACCGGGCGC CGACGCCGGC CGGCGCGCGC ACCGTGCTGG TCGAGCCTCT GTCCACCGAG ACCGATCTCA TCTATCTCGG CTGGGTGACC GAAAACATGC GCCGGGTGTC CGAGGCCACC GAGGGCCGGG TCGGCTACCT GCACATCCCG GACATGGGCC CCGACGGCAT TCGCGAGTTC ATCAAGTGGT ATTACGGCCA GGTGCGCAAA GAGGGCCTGA TCGTCGATGT CCGCGGCAAC GGCGGCGGCA ACGTCTCGCA GATGATCATC GAACGCCTGA GCCGCACCCT GCGCAGCGTC GACTTCGCGC GCAACGCCGA CCACCTCTTC ACCTACCCGG CCGTGGTCTT TCACGGACAC ATGGTCGCGT TGATCAACGA GACCTCGGCC TCGGACGGCG ACATCTTCCC GTGGATGTTC CGCGAATCCG GGCTGGGGCC CCTGATCGGT AAGCGCACCT GGGGCGGCAT CGTCGGCATC TCGTTCCACG GCCCGCTCAT CGACGGCGGC AGCGTCTTCG TCCCCGAGTT CGGCAACGCC TCGGCCGACG GCCAGTGGGT CATCGAGGGC GTGGGCGTGA CCCCGGACAT CGAGGTCGAA AACGATCCCG TGTCGGTGAT TCAGGGCCGC GATCCGCAGC TCGAGCGCGG TATCGAAGAG GTAATGAAGC GCATCGCGGC CGAGCCCCGC AGCCTGCCCG GCCGCCCGGC GCCGCCGGTC AAGACCATCG AGATGCTCGA GAAGGACGCG GCCGAGGCGC CGCCCGAGAG CTGA
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Protein sequence | MTRKKLFHLW AAAAPSERTR GTARARGGAG TLLALAALGA SACGGMPPSM APPATAGSTA ADVPPAVPLP GSEVVDAERA TKLMRYPDVH EDLVVFTYAG DLWLARTSGG TAARLTAHPG LELFPKFSPD GQWIAFTGQY GGDEQVYVIS VGGGTPRQLT YYPARGPLPA RWGYDNQVYG WTPDGTQVLF RSLRDSYDVG SSRLYTAAVS GGMPSPLPMP EAGAGALSPD GKRVVYSPLF RDFRTWKRYA GGWAQDLYVF DIDNTSVQRI TDDPRVDRDP MWIGDSVYFA SERTGVSNLF RYDFETGSAE QLTTHTDWDV RWPSADASGS IVYELEGDLY LFDAGTREER KLSIYVPDDG LSRQSEWVSA GQHIESFSLS PDGKRALFVG RGDLFTVPVE HGLVRNLSHT PNAHEREASW MPDGSHVVYV SDWSGEEELW VVDQRGQSPA RQLTKGNGGR LYEPRFSPDG RHVAYSDHRG RIFVIPAAGG QPLEVADEPF GRADDYRWSP DGQFLAFSLS DDTGLSSIYI WGMRDRRLRR ITGPEFDEGS PVWHPGGEHI FFLSRREFQP QIGQLEWNYV ANRGTMVLGL ALHPGAPNLF GPRNDEVGEG EEEEDEQKQP GKLGGGRKNF SRRVRVDFEG LAERVIRAPI PADNYAGLAV TESHLLFVKQ EAFFYGREPM VKPMLQAYGF KDRKVIDMVS EVAGYSLSDD GKLVLVQQGK GYKVYPVGKP GAEAGEAVKP VAVDGLKLRR VPSLEWQVVF AEVWRRFRDF FYVENMHGYD WQALRAKYEP LLRHVSHRSD LNYLIGEMIA ELNVSHAYIA GGDEKLPARQ HVALLGARLE LDPGAGRYRV TRILPGQNSE KRYRSPLTEV GVRVAEGDYI LGINGENLDA SENPYRLLQL PAGQPVELLV NRAPTPAGAR TVLVEPLSTE TDLIYLGWVT ENMRRVSEAT EGRVGYLHIP DMGPDGIREF IKWYYGQVRK EGLIVDVRGN GGGNVSQMII ERLSRTLRSV DFARNADHLF TYPAVVFHGH MVALINETSA SDGDIFPWMF RESGLGPLIG KRTWGGIVGI SFHGPLIDGG SVFVPEFGNA SADGQWVIEG VGVTPDIEVE NDPVSVIQGR DPQLERGIEE VMKRIAAEPR SLPGRPAPPV KTIEMLEKDA AEAPPES
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