| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5009 |
|---|
| Symbol | |
|---|
| ID | 8547419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 6908143 |
|---|
| End bp | 6910725 |
|---|
| Gene Length | 2583 bp |
|---|
| Protein Length | 860 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 646389685 |
|---|
| Product | Site-specific DNA-methyltransferase (adenine- specific) |
|---|
| Protein accession | YP_003269391 |
|---|
| Protein GI | 262198182 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0286] Type I restriction-modification system methyltransferase subunit |
|---|
| TIGRFAM ID | [TIGR00497] type I restriction system adenine methylase (hsdM) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.235997 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTGACA CCACCAGACG GCATACCGAC GAGCATCGGG ATGCGCTCGA GGCCCAGCAG
CCGCTGACCT TGGGGCAGCT CGAGCGCCAT CTCTACGCCG CCGCCGACAT CCTGCGCGGC
AAGATGGATG CGTCCGAATT CAAGGAGTAC ATCTTCGGGA TGCTGTTCAT CAAGCGGTGC
TCGGACGAGT TCGAGGCCCG CCGCGAGGAG ATCCTCGCCG AGCAGCAGGC GGCCGGGGCG
AGCGCTGAGG CGGCGGCGCT GGCGGCCGAG CAGCCGGAGC GCTACGCGCG TTCGTTCTTC
GTGCCGCCGA GCGCGCGCTG GGCCCAGGTG AGCGCGCTCG AGCGCGATCT CGGCACCGGG
CTCAACGCCG CCCTGGCCGC GCTCGAGGAT ACCAACCCGG CGCTTCACGG CGTGCTGCGG
CACATCGACT TCAACCGCAC GGTGGGCAAG AGCCGCATGC CGGACAAGCG GCTGCGGGCG
CTGGTGGCGC ATTTCGGACG GCACCGCCTG CGCAACCGCG ACTTCGAGTT CTCGGACATG
CTGGGCGCGG CCTACGAGTA TCTCATCGGC GAGTTCGCCG ACTCCGCAGG CAAGAAAGGC
GGCGAGTTCT ACACCCCGCG GCCGGTGGTG CGGCTCATTG TCCGCCTGTC CGACCCGCGG
CCGGGCATGC GGGTCTACGA TCCCTGTTCG GGCTCGGGCG GCATGCTCAT CCTGGCCCGC
CAGTACGTGC AGGAACACGG CGGCGACGCC GGCTCGCTGG GCCTGTACGG GCAGGAGGAC
AACGGCGGGG TGTGGACCAT CTCGCAGATG AATATGCTGC TGCACGGCGT GAGCGACGCC
GATATCCGCA ACGGCGACAC CCTGCACGAG CCGCTGCATA TCGACCCGGC GAGCGGCGAG
CTGCTGCGCT TCGACCGCAT CATCACCAAC CCGCCCTTCG CGCAGAACTA CAGCCCGGAC
GAGCTGCCGC TCCCCGAGCG CTTTCGCTTC GGCATGTGCC CGCACGCGGG CAAGAAGGCC
GACTGGATGT ACGCCCAGCA CATGCTCGCG GCGCTGGCGC CCGGCGGCAT GGCGGTGACC
GTGATGCCGC ACGGCGTGCT GTTCCGAGGC GGCGTCGAGC AGGCCATCCG CAGCCGCGTG
CTCGAGGCCG ATCTGGTCGA GGCCGTGATC GGCCTGCCGC CGAATCTGTT CTACGGCACC
TCGATCCCGG CGTGCGTGCT GGTGCTGCGC GCCCCCGAGG CCAAGCCGCC GGAGCGGCAG
GGGCGGGTGC TGTTCGTCGA CGCCTCGGAC GAATTTCACG CCGCGCGCGC CCAGAACCAC
CTGCAGCCCG AGCACGTCGA AAAGATCGCC ACCGCGTTCG AGCGCTTCGC CGAGGTTCCC
GGCTACGCCA GCGTGGTGAG CGTCGACGAG ATCCTGGCGG CGGGCGGCAA TCTCAACATC
CGCAGCTACG TGAGCCGCGC CGCCGCGCCC ACCGGCTACG ACGTGCGCGG ATTGATCGAG
GGCGGGGTGC CGCGCGCCGA GGTCGAGGCC GAGCGCGCGC GCTTTGCCGC GGTCGGCCTC
GATCTGGGTT CGGTGCTGCG GCTGCAGGGC GGCGGTCTCA GCTACTGGTT TGCTGACGGC
ATCAGCCAGC GCCGCGACCT GCGCGCGGCC GTGGACGGCG ACCTGCGGGT GCGCAGCGCG
CACGTCGATA TGCTGGCGCG CACCGATGCC TGGTGGGCGG CGCATCGCTG GGTGCTCGAG
TCCTTGGCCG ATGCCCGCGC GGGCGCTGTG GCGGACTCCG ATGCGGGCGC TGTGGCGGAC
CCCGATGCGG GCGTCGAGCG CGGTCGGGGC GGCCAGCGCA AGGGCGGCGC ACGCAAGCGT
GGGCGCGGTG ACCAGGCGGG CGCCTGTCGC GGCGGCGAGG TGGCGTTTTT GCGCGTGCGC
CGCTGCTTCG TCGACAGTTT CCGCGACGCG CTGAGCCCGG CCGGCGTGCT CGCGCCGCAG
GATCTGGCCG GGATCGCGGC CGGGTTCTGG GGCAGCCTCG AGCTCGAGCT CAAGATCCTC
ATGACCCGCG GCTTCGCCGG TCTGCTGTAT TCGTGGATCA AGGTGCTGGT GCGCGACGAC
AAGCCCAGCG CGCGCGGCCA GGCCGAGCTG GGACACATCG AGGTGGCCGC GCCCTCGCTC
GACATCGTCG GTCGCTTGCT CACCGAAGCC GGACAGGCGG ACCACGAACT GCGGGCTCTG
GAGGAGGGCG CCGCGCACAG CGCCGAGGAA CTCGACGGCG ACGCCCAGGC GCAGCTCGTC
GGCGAGCTGA CGCATCTGCG CAAGCGGCGC ACGCGGACGC GCGCGCAGGT GCTCGCGTGT
CTGCGCGCGG CCCAGGGGCG GATGCGCGAG GACGAGTGTC GCGAGCTGGT CATCGGGCTG
CTGCAGGACC AGCTCATCTG GAAGCTCGAG GAGGCCCTGC GCGGGCTGCG CGCGGACCTG
ACCGCGCAGC TCGAGCGCTG GTGGGACGCC TACCACGTGC CCCTGCGCGC GCTCGAGCGC
GAGCGCGATC GGGCCGCGAG CGAGCTGGAG ACGGCGCTGC GGGGGCTGGG TTATGTCGGC
TGA
|
|---|
| Protein sequence | MTDTTRRHTD EHRDALEAQQ PLTLGQLERH LYAAADILRG KMDASEFKEY IFGMLFIKRC
SDEFEARREE ILAEQQAAGA SAEAAALAAE QPERYARSFF VPPSARWAQV SALERDLGTG
LNAALAALED TNPALHGVLR HIDFNRTVGK SRMPDKRLRA LVAHFGRHRL RNRDFEFSDM
LGAAYEYLIG EFADSAGKKG GEFYTPRPVV RLIVRLSDPR PGMRVYDPCS GSGGMLILAR
QYVQEHGGDA GSLGLYGQED NGGVWTISQM NMLLHGVSDA DIRNGDTLHE PLHIDPASGE
LLRFDRIITN PPFAQNYSPD ELPLPERFRF GMCPHAGKKA DWMYAQHMLA ALAPGGMAVT
VMPHGVLFRG GVEQAIRSRV LEADLVEAVI GLPPNLFYGT SIPACVLVLR APEAKPPERQ
GRVLFVDASD EFHAARAQNH LQPEHVEKIA TAFERFAEVP GYASVVSVDE ILAAGGNLNI
RSYVSRAAAP TGYDVRGLIE GGVPRAEVEA ERARFAAVGL DLGSVLRLQG GGLSYWFADG
ISQRRDLRAA VDGDLRVRSA HVDMLARTDA WWAAHRWVLE SLADARAGAV ADSDAGAVAD
PDAGVERGRG GQRKGGARKR GRGDQAGACR GGEVAFLRVR RCFVDSFRDA LSPAGVLAPQ
DLAGIAAGFW GSLELELKIL MTRGFAGLLY SWIKVLVRDD KPSARGQAEL GHIEVAAPSL
DIVGRLLTEA GQADHELRAL EEGAAHSAEE LDGDAQAQLV GELTHLRKRR TRTRAQVLAC
LRAAQGRMRE DECRELVIGL LQDQLIWKLE EALRGLRADL TAQLERWWDA YHVPLRALER
ERDRAASELE TALRGLGYVG
|
|---|
| |