| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_4955 |
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| Symbol | |
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| ID | 8547363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 6829320 |
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| End bp | 6831947 |
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| Gene Length | 2628 bp |
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| Protein Length | 875 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 646389629 |
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| Product | signal peptide peptidase SppA, 36K type |
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| Protein accession | YP_003269337 |
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| Protein GI | 262198128 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.864933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCGA CACCGGCCCG TCGCGTTCTC GACCTGCTCT CGCGCCGCCC GCGCCTGCGC
CCGGAGGCTG CGCTCGCGCG GTTGCTCACG GTCGCGGCCG CGCTCGCTAC CCTGGGCGCG
CTGCTCGTAC TGCCGTCCCC GGCCGCGGCG CAGAGCTACG CCGAGGAGCC CACGGGCGGC
GTGCACCTGC CCGCGGTGGC GCTCGCGGGC GAGCACGACG CCTTTGCCAC CGCGGTCAAT
CCCGCCGGCC TGCGCTTCTT GCGCGGCCGG CAAGCGGCGC TGAGCGCCGG CGTCTACGAT
CTCTCGCATC CCAGCTCGGC CGGGCGCGGG CTGGGTCTGT TCGCGGGCGA CACCTTCGGC
GGCGGGCTGC TGCCGCTGCA GGGCATCGGG CTCGGCTTCG AGCTGCTGTC CCCGGGTGAT
GTGCTGGCCC CCGACACCGG GACGCCAGCG CGCTTCACCC TGGCGTACGC GCTGTCGCTG
GGTCGCGAGC TGGGCGTGGG CGTGGCCTGG CATCACTTTT TCGACGACCC GGACGAGATC
ACCGACGGCA TCGACAGCTT CGATCTCGGC GCGTCGCTGC GCATCGGCGC CTACTTCGCC
GCCGGCGCCG TGATCCGCGA TCTCAACAGC CCGGTGGTGG CCGGCGAGCT GGTCGAGCGC
CGCTACGAGC TCGAGCTGGT GACCCGGCCG CTCGGCACCG AGCGCCTGGA CCTCGGGCTG
GGCGCGCGCC TGGGCGAGCG CAGCAAGGAC CTCGACGCCT GGCTGCGCGG CCAGCTCAAG
ATCGTGGACG GCGTGTATCT GGGCGCGCAG CTCGAGAGCC GCGCGCTCAC GCTCCTGGAC
GAGGCCATGC CCGAGGCCAC CAGCAGCGAG CGCGACCTGC GCGTGAGCCT GGGCCTCGAG
GTGTCCTTCG GCAGCGTGAA CTCGGCCTTC TACGCCACCG CGGCGTCGCA GCCGGGCGGC
AGCTTCGCGG CCCGCGGCGG CAGCGTGCGC CTGAGCGTGG GCACGCCGCG GATCCCCTCG
GTGCTGGGCC GCGAGCGCCG CATCGAACAG GTGGCGCTCG CCGGCCGGCT CGACACCCGC
AAGCTGGCGC GCGCGCTCGT GCAACTGCGT CTGCTGGCGC GCGACGACTC GGTCGCCGGC
GTGTTCGTAC AGATCGCCGA TCCGGTCGAG GGTTGGGCCC AGGCCGAGGA GCTGCGCGGC
GCCCTGGGCG AGCTGCGCCG CGCCGGCAAG AAGGTCTACG CGTATCTCGT GTCCGGCTCG
ATGCGCGACT ACTTCATCGC CACCGGGGCC GATAAGATCT ATCTCGACCC CGCCGGCGGG
CTGGATTTCG TCGGACTGTC CGCCACCTCG CTGTATCTCG GCGAGGCGCT GGAGCGCGCC
GGCGTGGCGG CCGAGTTCGA GAAGATCGAG GAGTACAAGA GCGCGCCCGA GACCTTCACC
CAGGACGGCC CCAGCGAGGC CGCGCTGCGC ATGCGCAACG AGCTCTACGA CAGCGTCTTC
GCCGAGCTGG TGACGCGCAT CGCCGAGGCC CGCAAGCTCG ACGCGGACAC GGTCGAGGCC
CTGATCGACG AGGGCCCGTA CACGGCCGAG GCGCTGCAGC GAGGCACGGC CGCGCTGCTG
GTCGACGAGG TGGTCACGCT CGAGGACGTG GGCGCGCGCG TGTTCGCCGA CGTCGGCGCC
ATCCTGCCCT TGGCCGCGGC GCCGCGCGAG CGCCCCGAGG CCTGGGCGCA GCCGGCCGTG
GCCGTGATCG CGCTCGAGGG CGACATCGTG GCCGGGCCCT CGGCTGGTCT GCCGCTGCTC
GGCCGCCGCG TGGCCGGCAG CGAGACCCTG GTCCAGGCCA TCGCCTGGGC GCGCCACAAC
CCGCGCATCC AGGCCATCGT GCTGCGCATC GATTCGCCCG GCGGCAGCGC CGTGGCCTCG
GCCCTGATCG CGCGCGAGGT GTTCAAGACC CGCGGGGTCA AGCCCATCGT GTGCTCGCTG
GGCAACGCGG CCGCCTCGGG CGGCTACTAC GCGGCCGCCG GCTGCGACCA GATCTTCGCC
GAAGCGACCA CGATCACCGG CTCGATCGGC GTGTTCAGCG GCAAGTTCGA CATCTCCGGC
CTGCTCACGC GGCTCGGCGT GTCCTGGCAG CTCTACGAGC GCGGCGCGCA CGCGTCCATG
AACTCGATGC TGCGCCCGTT CACCACCGAG GAGCGCGCGC TGCTCGAGAA CCAGCTCCGC
GACAGCTACG AGCGCTTCAT CGACACCGTG GCGAGCGGTC GCAACATGAC GCCCGACCAG
GTGGACGAAA TCGGCCGCGG CCGGGTGTGG ACCGGGCAGC AGGCCAAGGC CGTGGGCCTG
GTCGACGATA TCGGCGGGCT GCTCGACGCC CTGAGCGCGG CCAAGCACCG CGCCGGCCTG
CTGCCCGAGC AGCGCGTCGA GCTGGTGTGG CTGCCCGAGG AGCCGCGCGG TCTGGCGCGC
TGGTTGATGC AGCAGGTGGG CGCGAGCGCG GGGGGACGCG ACAGCTTCGC GGCCGCGGCG
CTGGCCTGGC CGCCGGCGCT GCGCGCGCTG CGCGAGCATC TGCCGGCGTC GCTGTGGGTC
GAGCCCGAGG CGGTGCAGGC ACGCCTGCCG TTCACGCTGG GCTGGTAG
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| Protein sequence | MSSTPARRVL DLLSRRPRLR PEAALARLLT VAAALATLGA LLVLPSPAAA QSYAEEPTGG
VHLPAVALAG EHDAFATAVN PAGLRFLRGR QAALSAGVYD LSHPSSAGRG LGLFAGDTFG
GGLLPLQGIG LGFELLSPGD VLAPDTGTPA RFTLAYALSL GRELGVGVAW HHFFDDPDEI
TDGIDSFDLG ASLRIGAYFA AGAVIRDLNS PVVAGELVER RYELELVTRP LGTERLDLGL
GARLGERSKD LDAWLRGQLK IVDGVYLGAQ LESRALTLLD EAMPEATSSE RDLRVSLGLE
VSFGSVNSAF YATAASQPGG SFAARGGSVR LSVGTPRIPS VLGRERRIEQ VALAGRLDTR
KLARALVQLR LLARDDSVAG VFVQIADPVE GWAQAEELRG ALGELRRAGK KVYAYLVSGS
MRDYFIATGA DKIYLDPAGG LDFVGLSATS LYLGEALERA GVAAEFEKIE EYKSAPETFT
QDGPSEAALR MRNELYDSVF AELVTRIAEA RKLDADTVEA LIDEGPYTAE ALQRGTAALL
VDEVVTLEDV GARVFADVGA ILPLAAAPRE RPEAWAQPAV AVIALEGDIV AGPSAGLPLL
GRRVAGSETL VQAIAWARHN PRIQAIVLRI DSPGGSAVAS ALIAREVFKT RGVKPIVCSL
GNAAASGGYY AAAGCDQIFA EATTITGSIG VFSGKFDISG LLTRLGVSWQ LYERGAHASM
NSMLRPFTTE ERALLENQLR DSYERFIDTV ASGRNMTPDQ VDEIGRGRVW TGQQAKAVGL
VDDIGGLLDA LSAAKHRAGL LPEQRVELVW LPEEPRGLAR WLMQQVGASA GGRDSFAAAA
LAWPPALRAL REHLPASLWV EPEAVQARLP FTLGW
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