Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_4061 |
Symbol | |
ID | 8546462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 5576248 |
End bp | 5579772 |
Gene Length | 3525 bp |
Protein Length | 1174 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 646388738 |
Product | DNA polymerase III, alpha subunit |
Protein accession | YP_003268453 |
Protein GI | 262197244 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.496247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0397833 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCGT TCACACATCT CCACCTGCAC ACTCAATATA GCCTCTTGGA TGGGGCCATC CGGGTCAAGG ACCTCTTTCC GAAGGTGCTC GAGCTCGGCA TGGACTCGGT GGCGGTCACC GACCACGGCA ACATGTTCGG CGCCGTGGAT CTGTACACCG CGGCCCGCGA GCACGGGGTC AAGATGATCT TCGGCTGCGA GACCTACATC GCGGCCAGCG ATCGCTTCGA CCGCACCAAC CGCCGCAGCT ATCACATGGT GCTGCTGGCC AAGGACCAGG TCGGCTACAA GAACCTGTCG TTCCTCAACT CCATGGGCTA CCTGGAGGGC TTCTACTACA ACCCGCGCAT CGACAAGAAG ATCCTGCGCG AGCACTCCGA GGGGCTCATC GGCATGAGCG CGTGCCTCGG CGGCGAGGTC GCGCAGACCC TGCTCAAGCA GGGCACGGCC GAGGCCGAGG CGGTGGCGCT CGAGTACCAG GACATCTTCG GCAAGGGCAA CTTCTACCTG GAGATGATGG GCAACCAGCT CGAGGAGCAG CAGCAGCTCA ACGCCGACCT CAAGCGCATG AGCAGAAAGC TCGGCATCCC GTTGGTGGCG ACCAACGACT GCCACTACGT GAGCCAGCAG GACGCCCACG CCCACGAGAT CCTGCTCAGC ATCCAGACCG GCAAGACCAC CAGCGACGAC AAGCGCCTGC GCCACACGGT CGACTCCTAC TTCCTCAAGA ACGCGGCCGA GATGGAGGTG GACTTCAGCG ACGTGCCCGA GGCCATGGAG AACACGGTCG ACATCGCCAG GCGCTGCAAC GTCGAGCTCG ACCTCGGCAA CACCTTCCTG CCCAACTACA AAGTCCCCGA GGGCATGAGC GTCGAGAGCT ACCTCGAGAA GGTGGTCTTC GACGGCCTCG AGCGCCGCTT CCGCGAGCTG AGCGAGATCG GACGCTCGTT CGATCCCGAC CAGTACCGCG AGCGCCTGCG CCACGAGCTC GGCGTCATCA ACAAGATGGG GTTCCCGGGC TACTTCCTCA TCGTGTGGGA CTTCATCAAC TGGGCCAAGG AGCACAACAT CCCGGTCGGC CCGGGCCGCG GCTCGGGCGC CGGTAGCTGC GTGGCCTGGG CCATGCGCAT CACCGACATC GACCCGCTGG AGTTCAAGCT GCTGTTCGAG CGCTTCCTCA ACCCCGAGCG CGTGAGCATG CCCGACTTCG ACGTCGACTT CTGCATGAAC CGGCGCGACG AGGTCATCGA CTACGTCAAG CGCAAGTACG GCGAGAAGAA CGTCGGCCAG ATCGCCACCT TCCACCAGCT CAAGGCGCGC GGCGTCATCC GCGACATCGC CCGGGTCATG GAGCTGCCCT ACGCCGAGGC CGACAAGCTG GCCAAGCTGG TGCCCGACCC GGTGGGCGGC AAGTCGCCGC CGGTGCGCGA CGCCATCGAG CAGGAGCCCG AGCTCAAGCG GCTGTACAAC GAGGACCCCA AGATGCGCGA CCTGCTCGAC GTCGCCGCCT CGCTCGAGGG CCTCAACCGC CACGTCGGCA TGCACGCGGC CGGCGTGGTC ATCGCCGAGG ATCCGCTGTG GGAGTACGTG CCCTGCTTCC GCGGGCAGAA CGGCGAGATC GTCACCCAGT TCGCGATGAA GGAGGCTGAG AAGGCCGGCC TGGTCAAGTT CGACTTCCTC GGCCTCAAGA CCCTCACCGT CATCCACACC GCGGTGCGCC TGATCAACGA GCAGCGCGAG GCCGCGGGCG AGCCGCTGTT CGACATCGAC AAGATCGACA AGGGCGACCC CGCGGTCTAC AAGATGATCT CGCGCGGCGA CACCACCGGC GTGTTCCAGC TCGAGTCCTC GGGCTTCCGC GAGATCCTCA CCAAGCTCAA GCCCGACCAG CTCGAGGACA TCGTCGCCGC CGTGGCCCTG TACCGACCCG GCCCGCTCGA GGGCGGCATG GTCGACGACT TCATCGAGCG CAAACACGGG CGCAAGCGGG TCGAGTATCC GCACCCCGAC CTCGAGCCGG TGCTGCGCGA CACCTACGGC GTCATCGTCT ACCAGGAGCA GGTGATGCAG ATCGCCCAGG TCCTGGCCGG CTACAGCCTG GGACGCGCGG ATCTTCTCCG CCGCGCCATG GGCAAGAAGA ACAAAGACGT CATGGCCAAG GAGAAGGACG GCTTCGTGAC CGGCGCCACC GAGCGCGGCG TCGACTCCAA GCTGGCCGAG CAGGTCTTCG ACCTCATGGC CTTCTTCGCC GGCTACGGCT TCAACCGCTC GCACTCGGCC GCCTACGGCT GGATCTCGTA CCAGACCGCC TACCTCAAGC ACCACTACCC GCACGAGTTC ATGGCCGGTC TGATGTCCTG CGACCAGGAC AACACCGACA ACATCGTCAA GTTCATCGCC GAGGCCCGGG CCATGGGCCT GGTCGTGGCC CGTCCCGACG TCAACGAGTC GGCCGCCGAC TTCACCGTCG TGGTCGGCGA GGACGACACC AAGCGCATCC GCTTCGGCCT GGGCGCGGTC AAGGGCGTGG GTCAGGGCGC GGTCGAGGCC ATCATCGAGT GCCGCAATCA GGACGAGAAG TTCATCTCGA TCTACGAGTT CTGCCGGCGC GTGGACTCGC AGAAGTGCAA CCGGCGCGTC ATCGAAGCCC TGGTCAAGAG CGGCGCCTTC GACGGCCTGT CCGAAGACGC CGGTCTGCAC CGCGCGCGCG TGTTCGCCAC CATCGAGGCG GCCATGGAGA GCGGCGCCCA GGCCCAGCGC GACCGACGCA GCGGCCAGAC CTCGCTGTTT GGCCTCATCG CCGCGCCCGA GGGCGACAGC GGCGCCACCG CCGACGGCAT GCCCGAGACC TACCCCGAGG TCGAAGAGTG GCCGGCCAAG GAGCTGTTGG CCTTCGAGAA GGAGTCGCTC GGCTTCTACA TCAGCGGCCA CCCGCTCGAC CGCTACCGCG CCGATCTTAC GCGCTACGCC AACGCCACCA CCACCGACTT CCTCGAGGGC AAGCGCCCGG CCGGCCCGGC CGCGGTCGGC GGCGTGGTCT CGGCCTACCG CGAGCGGCCG ACGCGCAAAG GCGACGGCAA GATCGCCTTC TTCCAGCTCG AGGACGCCAC CGGCCAGCTC GAGGTCATCG TCTTCCCCAA GACCTTCGAG CGCGTGCGCG AGACCCTGGT GCTCGACGAG CCCATCCTGT GCAGCGGCAA GGTGGTCGAT GAAGGCGAGG GCGCCCAGCA CGCCTGGCGC ATGCTGCTCG AGGAGGCCAC GCCCCTGGCC CATCTGCGCC AGAGCCAGAC CTCGCGGGTC GATATCCACA TCGCGGCCGA CCAGGTCACG CCCGATCAGA TCGAGGCGCT CGAGCAGATC CTCACCGCCA GCCGGGGCTC GTGTCAGGCC GTGCTGCACC TGTCCATCCC GCGCCGCTCG GCGACCTCGG TGTGGCTCGA CCCGCGCTGG AACGTGGCCC CGAGCGAGGA GCTTCTGGCG CGCATCGAGC GGCTCTTCGG CGCCCCGGTC GCGACCCTGC ACTGA
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Protein sequence | MSAFTHLHLH TQYSLLDGAI RVKDLFPKVL ELGMDSVAVT DHGNMFGAVD LYTAAREHGV KMIFGCETYI AASDRFDRTN RRSYHMVLLA KDQVGYKNLS FLNSMGYLEG FYYNPRIDKK ILREHSEGLI GMSACLGGEV AQTLLKQGTA EAEAVALEYQ DIFGKGNFYL EMMGNQLEEQ QQLNADLKRM SRKLGIPLVA TNDCHYVSQQ DAHAHEILLS IQTGKTTSDD KRLRHTVDSY FLKNAAEMEV DFSDVPEAME NTVDIARRCN VELDLGNTFL PNYKVPEGMS VESYLEKVVF DGLERRFREL SEIGRSFDPD QYRERLRHEL GVINKMGFPG YFLIVWDFIN WAKEHNIPVG PGRGSGAGSC VAWAMRITDI DPLEFKLLFE RFLNPERVSM PDFDVDFCMN RRDEVIDYVK RKYGEKNVGQ IATFHQLKAR GVIRDIARVM ELPYAEADKL AKLVPDPVGG KSPPVRDAIE QEPELKRLYN EDPKMRDLLD VAASLEGLNR HVGMHAAGVV IAEDPLWEYV PCFRGQNGEI VTQFAMKEAE KAGLVKFDFL GLKTLTVIHT AVRLINEQRE AAGEPLFDID KIDKGDPAVY KMISRGDTTG VFQLESSGFR EILTKLKPDQ LEDIVAAVAL YRPGPLEGGM VDDFIERKHG RKRVEYPHPD LEPVLRDTYG VIVYQEQVMQ IAQVLAGYSL GRADLLRRAM GKKNKDVMAK EKDGFVTGAT ERGVDSKLAE QVFDLMAFFA GYGFNRSHSA AYGWISYQTA YLKHHYPHEF MAGLMSCDQD NTDNIVKFIA EARAMGLVVA RPDVNESAAD FTVVVGEDDT KRIRFGLGAV KGVGQGAVEA IIECRNQDEK FISIYEFCRR VDSQKCNRRV IEALVKSGAF DGLSEDAGLH RARVFATIEA AMESGAQAQR DRRSGQTSLF GLIAAPEGDS GATADGMPET YPEVEEWPAK ELLAFEKESL GFYISGHPLD RYRADLTRYA NATTTDFLEG KRPAGPAAVG GVVSAYRERP TRKGDGKIAF FQLEDATGQL EVIVFPKTFE RVRETLVLDE PILCSGKVVD EGEGAQHAWR MLLEEATPLA HLRQSQTSRV DIHIAADQVT PDQIEALEQI LTASRGSCQA VLHLSIPRRS ATSVWLDPRW NVAPSEELLA RIERLFGAPV ATLH
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