| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3985 |
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| Symbol | |
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| ID | 8546381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 5487497 |
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| End bp | 5488843 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 646388657 |
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| Product | preprotein translocase, SecY subunit |
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| Protein accession | YP_003268377 |
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| Protein GI | 262197168 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00342615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCAGCT CCATCTCAAA CATCGGCAAG ATTCCCGAGC TCAGGAAACG CATCCTGTTC
ACGCTCGGGA TGCTCGCGGT TTACCGCATC GGCATCTTCG TCACCCTGCC GGGCGTCAAC
CGCGTCGAGA TGCAGAATCT CATCTCGACC GGCGGCACCG GCACCTTCCT GGGACTCTTC
AGTGTGTTCT CGGGCGGGGC CCTGGAGCAG CTGTCGATCT TCGCGCTGGG CATCATGCCC
TACATCAGCG CGTCGATCAT TTTGCAGCTG CTCACGGTGG TAGTGCCAAA GCTCGACCAG
CTCAATAAAG AGGGCGAGCA GGGCCGCAAG AAGATCAACC AGTACACGCG CTACGGCACC
ATCGGCCTGT CGATCGTTCA GGCGGTCTTC CTGTCGTCGT GGCTCGTGGG GCTGGGACGC
GGCGGCGGTG GTTACTCCGC AGGCGAGGTC GTCAACGACC CCGGCATGTG GTTCCACATC
ATGACCGTGT TGACGCTGAC CACGGGGACC GCTTTCCTGA TGTGGCTCGG TGAGCAGATC
ACCGAACGCG GCATCGGCAA CGGCATCTCC CTGCTCATCT TCGCCGGCAT CGTCGCCGGC
ATGCCCGACG CGCTCACGCA GCTCTTCGGA CGCAGCTCCA CGGGCGACTA CGACCTGTTC
ATGCTGCTCG TGCTGCTGCT CATCGCCGTC GGCACGATCG CCACCATCTG CTACTTCGAG
CGCGCCCATC GCCGCATCCC GGTGCAGTAC ACCAAGCGCA TGGTGGGCCG GAAGATGTAC
GCGGGGACGC AGACCCACCT GCCGCTCAAG ATCAACGTCT CGGGCGTCAT CCCGCCGATC
TTCGCCTCGT CGATCCTCAT GTTCCCGGCG CAGATCGCCA ACATGGTCGG CACGCCGTGG
ATGCAGTCGG TGGCCAACGC GCTCAATCCC AACGACTGGC GCTACAACGT CATCTACGTC
GGGCTGATCG TGTTCTTCAC CTTCTTCTAC ACCGCCGTGA CCTTCAACCC GGTGGACGTC
GCCGACAACC TCAAGAAGAG CGGCGGCTTC ATCCCCGGCA TCCGTCCCGG CAAGAAGACG
GCCGAGTACA TCGACTACGT GCTCACCCGC ATCACGGCCG CAGGCGCCGT GTATCTGTCG
GCCGTGTGCC TGGTGCCCGC GCTGCTGCAG AACTGGATGC AGGTGCCGTT TTACTTTGGC
GGCACCGGCC TGCTCATCGT GGTCGGCGTC GCGCTCGACA CCGTCCAGCA GATCGAGAGC
CATCTCATCA CCCGTAACTA CGAGGGATTC ACCGGTCCCA AGGGGCCGCG CATCCGCGGC
CGCGTGACCA GTGGCCGCGG GCGCTGA
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| Protein sequence | MASSISNIGK IPELRKRILF TLGMLAVYRI GIFVTLPGVN RVEMQNLIST GGTGTFLGLF
SVFSGGALEQ LSIFALGIMP YISASIILQL LTVVVPKLDQ LNKEGEQGRK KINQYTRYGT
IGLSIVQAVF LSSWLVGLGR GGGGYSAGEV VNDPGMWFHI MTVLTLTTGT AFLMWLGEQI
TERGIGNGIS LLIFAGIVAG MPDALTQLFG RSSTGDYDLF MLLVLLLIAV GTIATICYFE
RAHRRIPVQY TKRMVGRKMY AGTQTHLPLK INVSGVIPPI FASSILMFPA QIANMVGTPW
MQSVANALNP NDWRYNVIYV GLIVFFTFFY TAVTFNPVDV ADNLKKSGGF IPGIRPGKKT
AEYIDYVLTR ITAAGAVYLS AVCLVPALLQ NWMQVPFYFG GTGLLIVVGV ALDTVQQIES
HLITRNYEGF TGPKGPRIRG RVTSGRGR
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