| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3962 |
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| Symbol | |
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| ID | 8546358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 5463665 |
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| End bp | 5464852 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 646388634 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_003268354 |
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| Protein GI | 262197145 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.112319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGAA GCCGGACATC GACCTGGTCA TGGCTGGCCT GCGCGATGCT GGCGGCCGCG
CTGGCCGCGG GCTGCGGCGC CAGCTCGCAG CAGCGCGTGG CCGAGGCCCG CGCCGACGGC
GTCAAAGAGG CGCCCAAGCT GCCGCCGGTG GCCCCGGAGG CGCTCACGGC CTTCGACGAG
GGCATGCGCT GGATGCGCGC TGCGCAGAAA CGCAAGCGCA CCAAGCCGCG CCGCGAGGCG
CTCGACAAGG CGCGCACGGC GCTGCGTCGC GCGGTCGAGA TCGACGGCAC GGTGTGGGAG
GCGTGGCACA ACCTGGGCGC GATTCAGTTC GCCGAGGGCG ACGACGAGGG CGCGACCGCC
GCGTTCGGCA GCGCGCTCGC GGTCAATCCC GTGCACGTGG GCTCGCTGTT CGGCCGCGCC
GAGGCCCACC GCCGCGCCGG GCGCACCGAC GAGGCCCGCA CGGACTACGA GGCCGCCGTG
GCCCAGAGCG CCGAGGACAG CCCGCAGCGG CGCAACGCCA CCGCGCGGCT GGCCTCGCTG
CTGCGCGAGG CCAAGCGCTA CGACGACGCG GTCGCCGTCA TCCGCGACAC CCTGCGCACC
TCGGGCGCCA ACGCCCAAGT CTACGTCGAG CTGGGCATGA TCTACATGGC CCAGGGCCGC
GACGACCTGG CCACCCTGGT GCTGGGCAAG GCGGCCGAGC TCGACCCCGA GCTGCCGTCC
ATCTACAACG CCTACGCGCT GCTGGCGCTG TCGAGCGGCC GCGCCCAGGA GGCCTTCGAG
CGCTTCGACT ACGCCACCTC GCTGGACCCG AGCTATCTCG ACGCGCGCTT CAACAAGGCC
AGCGTGCTGC TCGACGCCGG CGACTACGCG CGCGCCAACG AGGAGCTCGC GGTGGTGGTC
GCGCAGCGGC CCGAAGACAT GGATGCGCAG GTGGCGCTCG GTGTAGCGCT TCGCGGCATG
GGCGAGTACG ATCAGGCCAA GTCGCAATGG GAGAAAGTCG TCCAGGAAGC ACCCACGCGG
AGTCGGGTGC GCGGTGACGC GCTGTTCAAC CTGGCGGTAC TGCAGATGAG CTTTCTCGAG
GACGAAAAGG GAGCTGTGGC CGCGTTCGAG CGCTTCCTCC AGGAAGCCCC GCGCAACCAC
GGCAAGCGCA AGGCGGCCGA GGAGAAGAAA AAGGAGCTCG GCCTGTGA
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| Protein sequence | MSRSRTSTWS WLACAMLAAA LAAGCGASSQ QRVAEARADG VKEAPKLPPV APEALTAFDE
GMRWMRAAQK RKRTKPRREA LDKARTALRR AVEIDGTVWE AWHNLGAIQF AEGDDEGATA
AFGSALAVNP VHVGSLFGRA EAHRRAGRTD EARTDYEAAV AQSAEDSPQR RNATARLASL
LREAKRYDDA VAVIRDTLRT SGANAQVYVE LGMIYMAQGR DDLATLVLGK AAELDPELPS
IYNAYALLAL SSGRAQEAFE RFDYATSLDP SYLDARFNKA SVLLDAGDYA RANEELAVVV
AQRPEDMDAQ VALGVALRGM GEYDQAKSQW EKVVQEAPTR SRVRGDALFN LAVLQMSFLE
DEKGAVAAFE RFLQEAPRNH GKRKAAEEKK KELGL
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